Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G56050 - ( GTP-binding protein-related )
40 Proteins interacs with AT1G56050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1602
| Class C:plastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0782
| Class C:plastid | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.1594
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G64190 | PredictedPhenotypic Suppression | FSW = 0.0126
| Class C:plastid | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G25400 | PredictedPhenotypic Enhancement | FSW = 0.2401
| Class C:plastid | PHOSPHATE TRANSLOCATOR-RELATED |
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0406
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT1G16240 | PredictedPhenotypic Enhancement | FSW = 0.0528
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT5G60540 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3157
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G80050 | PredictedPhenotypic Enhancement | FSW = 0.1866
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.1258
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.1430
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.1654
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G30160 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3317
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.1536
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0675
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.1617
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4163
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT4G39200 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2583
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G16420 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2097
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G19750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5510
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1473
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.1276
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G31170 | PredictedPhenotypic Suppression | FSW = 0.1006
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.1949
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.1836
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0285
| Unknown | SGA2 |
AT1G75290 | PredictedPhenotypic Enhancement | FSW = 0.0988
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.3513
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.1607
| Unknown | UNKNOWN PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1887
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0726
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G11240 | PredictedPhenotypic Suppression | FSW = 0.2566
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G59540 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1254
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1801
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.0506
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G24160 | PredictedPhenotypic Enhancement | FSW = 0.1005
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT5G45620 | PredictedPhenotypic Suppression | FSW = 0.1639
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT2G37420 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3153
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.3417
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT1G30580 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0091
| Unknown | GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454