Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G11240 - ( ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) arginyltransferase )
53 Proteins interacs with AT3G11240| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09630
   | PredictedAffinity Capture-MS | FSW = 0.0833
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT5G09590
| PredictedPhenotypic Enhancement | FSW = 0.1506
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT1G07810
| PredictedPhenotypic Enhancement | FSW = 0.0276
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
| AT4G12650
| PredictedPhenotypic Suppression | FSW = 0.1837
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLASMA MEMBRANE VACUOLE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G351601) HAS 983 BLAST HITS TO 980 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 434 FUNGI - 144 PLANTS - 228 VIRUSES - 0 OTHER EUKARYOTES - 177 (SOURCE NCBI BLINK) |
| AT5G09660
| PredictedPhenotypic Enhancement | FSW = 0.1374
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
| AT1G56050
| PredictedPhenotypic Suppression | FSW = 0.2566
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT2G43030
| PredictedPhenotypic Enhancement | FSW = 0.0514
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
| AT3G48930
| Predictedbiochemical | FSW = 0.0320
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G04340
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0197
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT2G32670
| PredictedPhenotypic Suppression | FSW = 0.2184
| Unknown | ATVAMP725 |
| AT4G18800
| PredictedPhenotypic Enhancement | FSW = 0.1969
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT3G13445
| PredictedPhenotypic Enhancement | FSW = 0.0855
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT5G12840
| PredictedPhenotypic Suppression | FSW = 0.0124
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
| AT2G30160
| PredictedPhenotypic Enhancement | FSW = 0.2504
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT3G10920
| PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
| AT3G54840
| PredictedPhenotypic Suppression | FSW = 0.1846
| Unknown | ARA6 GTP BINDING / GTPASE |
| AT2G05170
| PredictedPhenotypic Suppression | FSW = 0.0490
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
| AT4G39200
| PredictedPhenotypic Enhancement | FSW = 0.1930
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
| AT1G62800
| PredictedPhenotypic Enhancement | FSW = 0.0886
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
| AT4G16420
| PredictedPhenotypic Enhancement | FSW = 0.1310
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT1G19730
| PredictedPhenotypic Enhancement | FSW = 0.0343
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
| AT1G13580
| PredictedPhenotypic Enhancement | FSW = 0.2156
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
| AT1G19750
| PredictedPhenotypic Suppression | FSW = 0.3015
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G20693
| PredictedPhenotypic Suppression | FSW = 0.2172
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G47830
| PredictedPhenotypic Enhancement | FSW = 0.0693
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
| AT1G52500
| PredictedPhenotypic Enhancement | FSW = 0.1611
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
| AT1G60680
| PredictedPhenotypic Enhancement | FSW = 0.0723
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G37420
| PredictedPhenotypic Enhancement | FSW = 0.1945
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT2G44100
| PredictedPhenotypic Suppression | FSW = 0.0345
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
| AT2G48100
| PredictedPhenotypic Enhancement | FSW = 0.1807
| Unknown | EXONUCLEASE FAMILY PROTEIN |
| AT1G55300
| PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT2G03130
| PredictedPhenotypic Enhancement | FSW = 0.2308
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT3G06470
| PredictedPhenotypic Enhancement | FSW = 0.0909
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT5G13860
| PredictedSynthetic Rescue | FSW = 0.0486
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
| AT5G42720
| PredictedPhenotypic Enhancement | FSW = 0.2007
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT5G66640
| Predictedbiochemical | FSW = 0.0115
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
| AT3G13210
| PredictedPhenotypic Enhancement | FSW = 0.0993
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT3G18660
| PredictedPhenotypic Enhancement | FSW = 0.0485
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT3G18850
| PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1068
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT3G25900
| PredictedPhenotypic Enhancement | FSW = 0.1325
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
| AT3G27440
| PredictedPhenotypic Enhancement | FSW = 0.0833
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
| AT3G45577
| PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | TRNA-INTRON ENDONUCLEASE |
| AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.2514
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT4G10360
| PredictedPhenotypic Enhancement | FSW = 0.0545
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
| AT4G36050
| PredictedPhenotypic Enhancement | FSW = 0.1109
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT5G14060
| PredictedPhenotypic Enhancement | FSW = 0.2290
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
| AT5G41700
| PredictedPhenotypic Enhancement | FSW = 0.0677
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G64760
| PredictedPhenotypic Enhancement | FSW = 0.2010
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
| AT3G22590
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT1G07990
| PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT5G63920
| Predictedtwo hybrid | FSW = 0.0111
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
| AT2G28360
| Predictedinteraction prediction | FSW = 0.0070
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.762 seconds to be build.
This page takes 0.762 seconds to be build.