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AT5G41700 - ( UBC8 (UBIQUITIN CONJUGATING ENZYME 8) protein binding / ubiquitin-protein ligase )

135 Proteins interacs with AT5G41700

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G64920	Experimental pull down Reconstituted Complex in vitro	FSW = 0.0075	Unknown	CIP8 (COP1-INTERACTING PROTEIN 8) PROTEIN BINDING / ZINC ION BINDING
AT2G04240	Experimental two hybrid	FSW = 0.0074	Unknown	XERICO PROTEIN BINDING / ZINC ION BINDING
AT3G07370	Experimental two hybrid	FSW = 0.0163	Unknown	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT1G02860	Experimental split-reporter assay two hybrid	FSW = 0.0290	Unknown	NLA (NITROGEN LIMITATION ADAPTATION) UBIQUITIN-PROTEIN LIGASE
AT1G36340	Predicted Phylogenetic profile method Co-expression	FSW = 0.1941	Unknown	UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT4G14800	Predicted Co-purification Affinity Capture-Western	FSW = 0.0191	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G01410	Predicted two hybrid	FSW = 0.0052	Unknown	RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT5G09660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-Western	FSW = 0.1051	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G48170	Predicted Phenotypic Enhancement	FSW = 0.0540	Unknown	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G74710	Predicted synthetic growth defect	FSW = 0.0716	Unknown	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G11870	Predicted Phenotypic Enhancement	FSW = 0.0549	Unknown	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G16150	Predicted Phenotypic Enhancement	FSW = 0.0095	Unknown	PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT2G43030	Predicted Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement	FSW = 0.0772	Unknown	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT1G48860	Predicted Phenotypic Enhancement	FSW = 0.0347	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT5G03650	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0649	Unknown	SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT1G73230	Predicted two hybrid	FSW = 0.0107	Unknown	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0539	Unknown	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G58640	Predicted Phenotypic Enhancement	FSW = 0.0184	Unknown	SELENOPROTEIN-RELATED
AT1G05570	Predicted interaction prediction	FSW = 0.0351	Unknown	CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G25800	Predicted two hybrid	FSW = 0.0076	Unknown	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G04750	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0910	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G30110	Predicted biochemical biochemical	FSW = 0.0395	Unknown	ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT1G16890	Predicted Phylogenetic profile method	FSW = 0.1530	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT4G22120	Predicted two hybrid	FSW = 0.0159	Unknown	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G64230	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3312	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT4G18800	Predicted Phenotypic Enhancement	FSW = 0.0528	Unknown	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G56290	Predicted Affinity Capture-Western	FSW = 0.0076	Unknown	PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING
AT5G41580	Predicted Phenotypic Enhancement	FSW = 0.0415	Unknown	ZINC ION BINDING
AT4G13980	Predicted biochemical	FSW = 0.0060	Unknown	AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.0947	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G64630	Predicted Phenotypic Suppression	FSW = 0.0315	Unknown	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120	Predicted Phenotypic Enhancement	FSW = 0.0864	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted Phenotypic Suppression	FSW = 0.0783	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G09800	Predicted Phenotypic Suppression	FSW = 0.0687	Unknown	RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G02740	Predicted Phenotypic Enhancement	FSW = 0.0531	Unknown	CHROMATIN BINDING
AT2G37990	Predicted Affinity Capture-MS	FSW = 0.0051	Unknown	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G20010	Predicted Affinity Capture-Western	FSW = 0.0444	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G28460	Predicted Phenotypic Enhancement	FSW = 0.0439	Unknown	AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT2G15430	Predicted Phenotypic Suppression	FSW = 0.0405	Unknown	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G19210	Predicted Phenotypic Enhancement	FSW = 0.0839	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G25340	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0823	Unknown	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G25150	Predicted Phenotypic Enhancement	FSW = 0.0308	Unknown	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT3G49920	Predicted Phenotypic Enhancement	FSW = 0.0701	Unknown	VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT5G02730	Predicted Phenotypic Enhancement	FSW = 0.0454	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G24090	Predicted Synthetic Lethality	FSW = 0.0139	Unknown	ACIDIC ENDOCHITINASE (CHIB1)
AT3G54840	Predicted Phenotypic Enhancement	FSW = 0.0917	Unknown	ARA6 GTP BINDING / GTPASE
AT1G22200	Predicted Phenotypic Enhancement	FSW = 0.0096	Unknown	UNKNOWN PROTEIN
AT1G13060	Predicted Co-purification	FSW = 0.0385	Unknown	PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31970	Predicted Phenotypic Enhancement	FSW = 0.0862	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT3G13550	Predicted Phylogenetic profile method	FSW = 0.0917	Unknown	FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G19910	Predicted Phenotypic Suppression	FSW = 0.1167	Unknown	SOH1 FAMILY PROTEIN
AT4G26840	Predicted synthetic growth defect	FSW = 0.0105	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G30800	Predicted biochemical	FSW = 0.0066	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G38470	Predicted Synthetic Rescue Phenotypic Suppression	FSW = 0.0432	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT4G17190	Predicted Phenotypic Enhancement	FSW = 0.0630	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G09270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0339	Unknown	IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT2G15910	Predicted Affinity Capture-MS	FSW = 0.1600	Unknown	CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G20290	Predicted Affinity Capture-MS	FSW = 0.0478	Unknown	XIG MOTOR/ PROTEIN BINDING
AT2G30800	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0732	Unknown	HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G12200	Predicted Affinity Capture-MS	FSW = 0.0811	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18850	Predicted Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement	FSW = 0.0727	Unknown	LPAT5 ACYLTRANSFERASE
AT3G45630	Predicted Affinity Capture-MS two hybrid	FSW = 0.0302	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G49470	Predicted two hybrid	FSW = 0.0208	Unknown	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT3G50780	Predicted Affinity Capture-MS Phenotypic Enhancement	FSW = 0.0679	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT4G00800	Predicted Phenotypic Enhancement	FSW = 0.0910	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G02880	Predicted Affinity Capture-MS Affinity Capture-MS biochemical interaction prediction Enriched domain pair Co-expression	FSW = 0.0139	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G24840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0354	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT1G04730	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement interaction prediction	FSW = 0.1232	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08840	Predicted synthetic growth defect	FSW = 0.0386	Unknown	EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G10090	Predicted Synthetic Lethality	FSW = 0.0269	Unknown	UNKNOWN PROTEIN
AT1G10930	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0485	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G13580	Predicted Phenotypic Enhancement	FSW = 0.0908	Unknown	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G25155	Predicted synthetic growth defect	FSW = 0.0847	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27040	Predicted Phenotypic Enhancement	FSW = 0.0652	Unknown	NITRATE TRANSPORTER PUTATIVE
AT1G27080	Predicted two hybrid	FSW = 0.0124	Unknown	NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G29990	Predicted Phenotypic Enhancement	FSW = 0.0800	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49540	Predicted Phenotypic Suppression	FSW = 0.0601	Unknown	NUCLEOTIDE BINDING
AT1G51710	Predicted Synthetic Rescue	FSW = 0.1101	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G55300	Predicted Phenotypic Enhancement	FSW = 0.1322	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G66740	Predicted Phenotypic Enhancement	FSW = 0.1117	Unknown	SGA2
AT1G74250	Predicted Phenotypic Enhancement	FSW = 0.0091	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G80410	Predicted synthetic growth defect	FSW = 0.0617	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760	Predicted Phenotypic Enhancement Phenotypic Enhancement Phylogenetic profile method	FSW = 0.2206	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G13680	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0181	Unknown	CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G18290	Predicted Synthetic Lethality	FSW = 0.0247	Unknown	ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G20650	Predicted Affinity Capture-Western two hybrid	FSW = 0.0324	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G31260	Predicted Phenotypic Enhancement	FSW = 0.0454	Unknown	APG9 (AUTOPHAGY 9)
AT2G44150	Predicted Phenotypic Enhancement	FSW = 0.0845	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580	Predicted synthetic growth defect	FSW = 0.1071	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G05870	Predicted Reconstituted Complex biochemical	FSW = 0.0176	Unknown	APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G09640	Predicted Phenotypic Enhancement	FSW = 0.0272	Unknown	APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G10070	Predicted Phenotypic Enhancement	FSW = 0.0648	Unknown	TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G11240	Predicted Phenotypic Enhancement	FSW = 0.0677	Unknown	ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT3G11910	Predicted Phenotypic Suppression	FSW = 0.0097	Unknown	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G18520	Predicted Phenotypic Enhancement	FSW = 0.0792	Unknown	HDA15 HISTONE DEACETYLASE
AT3G18860	Predicted Phenotypic Suppression	FSW = 0.1964	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G20475	Predicted Phenotypic Suppression	FSW = 0.0473	Unknown	MSH5 (MUTS-HOMOLOGUE 5) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT3G22142	Predicted Phenotypic Enhancement	FSW = 0.0748	Unknown	STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480	Predicted Phenotypic Suppression	FSW = 0.0787	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G42660	Predicted Phenotypic Enhancement	FSW = 0.1499	Unknown	NUCLEOTIDE BINDING
AT4G05320	Predicted biochemical	FSW = 0.0295	Unknown	UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT4G19560	Predicted Phenotypic Enhancement	FSW = 0.1021	Unknown	CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G22140	Predicted Phenotypic Enhancement	FSW = 0.0670	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G25540	Predicted Phenotypic Suppression	FSW = 0.0229	Unknown	MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G38630	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0729	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10260	Predicted Phenotypic Suppression	FSW = 0.0581	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790	Predicted Phenotypic Enhancement	FSW = 0.0991	Unknown	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13780	Predicted synthetic growth defect	FSW = 0.0937	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G14060	Predicted Phenotypic Enhancement	FSW = 0.1438	Unknown	CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G14180	Predicted Phenotypic Enhancement	FSW = 0.0512	Unknown	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G15400	Predicted Affinity Capture-Western	FSW = 0.0338	Unknown	U-BOX DOMAIN-CONTAINING PROTEIN
AT5G45600	Predicted Phenotypic Enhancement	FSW = 0.1147	Unknown	GAS41 PROTEIN BINDING
AT5G49510	Predicted Phenotypic Enhancement	FSW = 0.0780	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G50870	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement interaction prediction Enriched domain pair Co-expression	FSW = 0.0441	Unknown	UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE
AT5G53770	Predicted synthetic growth defect	FSW = 0.0445	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G54940	Predicted Phenotypic Enhancement	FSW = 0.0298	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G63670	Predicted Phenotypic Suppression	FSW = 0.0356	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G63920	Predicted Phenotypic Enhancement	FSW = 0.0590	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT5G64760	Predicted Phenotypic Enhancement	FSW = 0.0360	Unknown	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT5G66100	Predicted Phenotypic Enhancement	FSW = 0.0793	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G61010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0769	Unknown	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT3G55380	Predicted interaction prediction Phylogenetic profile method Co-expression	FSW = 0.2140	Unknown	UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT2G16740	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0792	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G25760	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.2451	Unknown	PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G08700	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1863	Unknown	UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G56150	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1479	Unknown	UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT2G36060	Predicted Gene fusion method Co-expression	FSW = 0.0230	Unknown	UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN
AT3G08690	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1827	Unknown	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT5G53300	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method	FSW = 0.1709	Unknown	UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT4G27960	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.1728	Unknown	UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT3G46460	Predicted Phylogenetic profile method	FSW = 0.1588	Unknown	UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT1G78870	Predicted Phylogenetic profile method	FSW = 0.1582	Unknown	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42990	Predicted Phylogenetic profile method	FSW = 0.1684	Unknown	UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G62540	Predicted Phylogenetic profile method	FSW = 0.1643	Unknown	UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT1G14400	Predicted Phylogenetic profile method	FSW = 0.1354	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G41700 - ( UBC8 (UBIQUITIN CONJUGATING ENZYME 8) protein binding / ubiquitin-protein ligase )

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