Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15400 - ( U-box domain-containing protein )
23 Proteins interacs with AT5G15400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0181
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G20390 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0083
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0153
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G09840 | PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1852
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT5G52640 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0067
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G57660 | PredictedPhenotypic Enhancement | FSW = 0.0296
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G16190 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic Rescuetwo hybridinteraction prediction | FSW = 0.1013
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G25980 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G03340 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purificationReconstituted Complexinteraction prediction | FSW = 0.2139
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT5G38470 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternSynthetic RescueAffinity Capture-MStwo hybridReconstituted ComplexCo-purification | FSW = 0.1153
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G77130 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0907
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G50670 | PredictedSynthetic RescueReconstituted ComplexAffinity Capture-Western | FSW = 0.3952
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
AT2G17190 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.1818
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT3G18860 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1269
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G04210 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-Westerninteraction prediction | FSW = 0.1435
| Unknown | PUX4 PROTEIN BINDING |
AT4G05320 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSbiochemicalinteraction prediction | FSW = 0.1265
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G38630 | Predictedsynthetic growth defectPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0744
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT4G38930 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.2000
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
AT5G08160 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G41700 | PredictedAffinity Capture-Western | FSW = 0.0338
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454