Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03340 - ( cell division cycle protein 48 putative / CDC48 putative )
44 Proteins interacs with AT5G03340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0023
| Class D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G31780 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0328
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G09840 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4910
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT3G01610 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0150
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G53230 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1894
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G43670 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
AT1G53750 | PredictedAffinity Capture-Western | FSW = 0.0488
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G65040 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0487
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G54840 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | SGP1 GTP BINDING |
AT5G05760 | Predictedin vitro | FSW = 0.0469
| Unknown | SYP31 (SYNTAXIN OF PLANTS 31) SNAP RECEPTOR |
AT1G04980 | Predictedsynthetic growth defect | FSW = 0.0122
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
AT3G54130 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1250
| Unknown | JOSEPHIN FAMILY PROTEIN |
AT5G58290 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0353
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT4G17620 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | GLYCINE-RICH PROTEIN |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0110
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G03670 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0690
| Unknown | CDC48B ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G38470 | PredictedAffinity Capture-Western | FSW = 0.0713
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G11710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0375
| Unknown | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G17760 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
AT5G48690 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL EUKARYOTE (INTERPROIPR015940) PUG (INTERPROIPR006567) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN (TAIRAT1G048501) HAS 6741 BLAST HITS TO 4773 PROTEINS IN 362 SPECIES ARCHAE - 9 BACTERIA - 355 METAZOA - 2762 FUNGI - 868 PLANTS - 184 VIRUSES - 19 OTHER EUKARYOTES - 2544 (SOURCE NCBI BLINK) |
AT4G29040 | Predictedin vivoin vitro | FSW = 0.0565
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT5G25060 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G61070 | Predictedin vivoin vitro | FSW = 0.0395
| Unknown | HDA18 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE DEACETYLASE |
AT1G01930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0526
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G14570 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1818
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
AT2G47110 | Predictedtwo hybrid | FSW = 0.0396
| Unknown | UBQ6 PROTEIN BINDING |
AT3G18860 | PredictedReconstituted ComplexAffinity Capture-WesternReconstituted ComplexAffinity Capture-MStwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.0809
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G04210 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridtwo hybridAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.0604
| Unknown | PUX4 PROTEIN BINDING |
AT4G05320 | Predictedtwo hybridReconstituted Complexinteraction prediction | FSW = 0.0419
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G10790 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0536
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
AT4G29330 | PredictedAffinity Capture-WesternDosage Growth Defect | FSW = 0.0426
| Unknown | DER1 (DERLIN-1) |
AT4G38930 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.2222
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
AT1G50670 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.2356
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
AT2G17980 | PredictedPhenotypic Suppression | FSW = 0.0373
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT3G49660 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G34100 | PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G10390 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | HISTONE H3 |
AT5G15400 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purificationReconstituted Complexinteraction prediction | FSW = 0.2139
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT5G49510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0094
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G15810 | Predictedinteraction prediction | FSW = 0.0441
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
AT2G21270 | Predictedinteraction prediction | FSW = 0.0622
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454