Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G01930 - ( zinc finger protein-related )
32 Proteins interacs with AT1G01930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0084
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G40890 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | ATCLC-A (CHLORIDE CHANNEL A) ANION CHANNEL/ NITRATE TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT3G09840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0537
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT2G01630 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0051
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | ATGCN1 TRANSPORTER |
AT1G70490 | PredictedAffinity Capture-MS | FSW = 0.0446
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT4G18040 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT4G22310 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-MStwo hybrid | FSW = 0.1017
| Unknown | UNKNOWN PROTEIN |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0116
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT5G03340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0526
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0253
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT2G27700 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0880
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0179
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G15400 | PredictedAffinity Capture-MS | FSW = 0.0907
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0438
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G04510 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G27640 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G39500 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454