Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G04510 - ( PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase )
42 Proteins interacs with AT5G04510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G34650 | Experimentalpull downcoimmunoprecipitation | FSW = 0.0483
| Unknown | PID (PINOID) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G47750 | Experimentalpull down | FSW = 0.1513
| Unknown | D6PKL2 (D6 PROTEIN KINASE LIKE 2) KINASE |
AT5G47760 | ExperimentalReconstituted Complex | FSW = 0.0508
| Unknown | ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2) PHOSPHOGLYCOLATE PHOSPHATASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G44830 | Experimentalpull down | FSW = 0.0889
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G36350 | Experimentalpull down | FSW = 0.0421
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G33610 | Experimentalpull down | FSW = 0.0105
| Unknown | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT3G25250 | ExperimentalReconstituted ComplexReconstituted Complextwo hybridin vitro | FSW = 0.0508
| Unknown | AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) KINASE |
AT1G79250 | Experimentalpull downReconstituted Complex | FSW = 0.0435
| Unknown | AGC17 (AGC KINASE 17) KINASE |
AT5G55910 | Experimentalpull down | FSW = 0.0744
| Unknown | D6PK (D6 PROTEIN KINASE) KINASE/ PROTEIN KINASE |
AT4G26610 | Experimentalpull downReconstituted Complex | FSW = 0.0978
| Unknown | D6PKL1 (D6 PROTEIN KINASE LIKE 1) KINASE |
AT5G40030 | Experimentalpull down | FSW = 0.0567
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G12690 | Experimentalpull downReconstituted Complex | FSW = 0.0210
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT2G26700 | Experimentalpull downReconstituted Complex | FSW = 0.0711
| Unknown | PID2 (PINOID2) ATP BINDING / KINASE/ PROTEIN KINASE |
AT1G53700 | Experimentalpull down | FSW = 0.0889
| Unknown | WAG1 (WAG 1) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G14370 | Experimentalpull down | FSW = 0.0559
| Unknown | WAG2 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G52890 | Experimentalpull down | FSW = 0.0489
| Unknown | KIPK (KCBP-INTERACTING PROTEIN KINASE) KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G27580 | ExperimentalReconstituted Complex | FSW = 0.0217
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G56000 | PredictedAffinity Capture-MSin vivoin vitro | FSW = 0.0248
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G10450 | Predictedin vivoin vitro | FSW = 0.0429
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G50240 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) PROTEIN-L-ISOASPARTATE (D-ASPARTATE) O-METHYLTRANSFERASE |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0091
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G02500 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT5G52640 | PredictedAffinity Capture-MSAffinity Capture-MSin vivoin vitrosynthetic growth defect | FSW = 0.0054
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G57530 | Predictedbiochemical | FSW = 0.0201
| Unknown | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT3G10540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0806
| Unknown | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE PUTATIVE |
AT4G18800 | Predictedinterologs mapping | FSW = 0.0061
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G08720 | Predictedbiochemicalbiochemicalbiochemicalsynthetic growth defectSynthetic RescuePhenotypic Enhancementinterologs mapping | FSW = 0.0668
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G61870 | PredictedGene fusion method | FSW = 0.0421
| Unknown | PPR336 (PENTATRICOPEPTIDE REPEAT 336) |
AT3G08730 | PredictedPhenotypic SuppressionPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancementin vivoAffinity Capture-MS | FSW = 0.0193
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0072
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G22720 | Predictedtwo hybrid | FSW = 0.0889
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CHROMATIN SPT2 (INTERPROIPR013256) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G378601) HAS 34422 BLAST HITS TO 21553 PROTEINS IN 958 SPECIES ARCHAE - 9 BACTERIA - 2953 METAZOA - 16492 FUNGI - 6405 PLANTS - 1061 VIRUSES - 320 OTHER EUKARYOTES - 7182 (SOURCE NCBI BLINK) |
AT3G15460 | Predictedbiochemical | FSW = 0.0049
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G19940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G68200 | PredictedAffinity Capture-MS | FSW = 0.0470
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G32415 | Predictedbiochemical | FSW = 0.0099
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT2G47090 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G59440 | PredictedSynthetic Lethality | FSW = 0.0290
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT3G20830 | PredictedGene fusion methodCo-expression | FSW = 0.0413
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454