Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12690 - ( AGC15 (AGC KINASE 15) kinase )
93 Proteins interacs with AT3G12690| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G04510
   | Experimentalpull downReconstituted Complex | FSW = 0.0210
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
| AT4G32470
| PredictedAffinity Capture-MS | FSW = 0.6800
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT3G47520
| Predictedinterologs mapping | FSW = 0.0336
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.5395
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.5269
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT3G62150
| PredictedAffinity Capture-MS | FSW = 0.1866
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.6639
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6660
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT2G29990
| PredictedAffinity Capture-MS | FSW = 0.1739
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.6361
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.6121
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.5623
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G10450
| PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.7452
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.5992
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT4G26970
| PredictedAffinity Capture-MS | FSW = 0.2142
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.6494
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.3397
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.6277
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT4G23430
| PredictedAffinity Capture-MS | FSW = 0.1041
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.4986
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.5550
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.5753
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.5885
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT2G21540
| PredictedAffinity Capture-MS | FSW = 0.1825
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.4721
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G50310
| PredictedAffinity Capture-MS | FSW = 0.3468
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.6741
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G22120
| PredictedAffinity Capture-MS | FSW = 0.1773
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.3176
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.7018
| Unknown | ZINC ION BINDING |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.5649
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.5355
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.1815
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT2G43810
| PredictedSynthetic Lethality | FSW = 0.0026
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.7084
| Unknown | HTA6 DNA BINDING |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.5458
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.5237
| Unknown | HISTONE H2B PUTATIVE |
| AT2G01390
| PredictedGene fusion method | FSW = 0.0531
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.4876
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.5994
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.4601
| Unknown | BINDING |
| AT1G79250
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0344
| Unknown | AGC17 (AGC KINASE 17) KINASE |
| AT3G16050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3387
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.6638
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.5583
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.7587
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT5G28060
| PredictedSynthetic Rescue | FSW = 0.0202
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.5239
| Unknown | PSF2 |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.6727
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G05650
| PredictedAffinity Capture-MS | FSW = 0.4357
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
| AT1G20610
| Predictedinterologs mappinginterologs mapping | FSW = 0.0187
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G26480
| PredictedAffinity Capture-MS | FSW = 0.1579
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.6241
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1688
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.7294
| Unknown | UNKNOWN PROTEIN |
| AT1G60730
| PredictedSynthetic Lethality | FSW = 0.0168
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.6759
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.6122
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.6039
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.4908
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.2937
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.3388
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.5241
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.1918
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G43360
| PredictedAffinity Capture-MS | FSW = 0.2584
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.6936
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.4765
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.5556
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.5667
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.3323
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.7566
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0932
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.5006
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.4659
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.5618
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.4676
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.5972
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.5357
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G30842
| PredictedAffinity Capture-MS | FSW = 0.5291
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.4838
| Unknown | ATATG18A |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.7022
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.5038
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G35380
| PredictedSynthetic Rescue | FSW = 0.0102
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
| AT4G35620
| PredictedAffinity Capture-MS | FSW = 0.1713
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.5672
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.5928
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.4965
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.5261
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G57330
| PredictedAffinity Capture-MS | FSW = 0.1404
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
| AT1G63400
| PredictedGene fusion method | FSW = 0.0561
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT4G25750
| PredictedGene fusion method | FSW = 0.0777
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT1G06145
| PredictedGene fusion method | FSW = 0.0481
| Unknown | EMB1444 (EMBRYO DEFECTIVE 1444) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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