Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G35690 - ( ACX5 (ACYL-COA OXIDASE 5) FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase acting on the CH-CH group of donors )
82 Proteins interacs with AT2G35690| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G56290
   | PredictedReconstituted Complextwo hybrid | FSW = 0.0261
| Class C:peroxisome | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
| AT1G06290
| PredictedPhylogenetic profile method | FSW = 0.0406
| Class C:peroxisome | ACX3 (ACYL-COA OXIDASE 3) ACYL-COA OXIDASE |
| AT5G65110
| PredictedPhylogenetic profile method | FSW = 0.0494
| Class C:peroxisome | ACX2 (ACYL-COA OXIDASE 2) ACYL-COA OXIDASE |
| AT4G16760
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1837
| Class C:peroxisome | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
| AT4G32470
| PredictedAffinity Capture-MS | FSW = 0.4852
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT3G09630
| Predictedtwo hybridtwo hybrid | FSW = 0.0079
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.4083
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.5493
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.1170
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT4G13940
| Predictedtwo hybridtwo hybrid | FSW = 0.0182
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5529
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT1G34030 | Predictedtwo hybridtwo hybrid | FSW = 0.0160
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0324
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.5350
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.4628
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.3889
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.5659
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.4501
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.5047
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.5645
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.3861
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.4799
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT2G27710
| Predictedtwo hybridtwo hybrid | FSW = 0.0066
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.4272
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT1G47550
| Predictedtwo hybridtwo hybrid | FSW = 0.0349
| Unknown | UNKNOWN PROTEIN |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.5211
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G22230
| Predictedtwo hybrid | FSW = 0.0419
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27B) |
| AT2G27530
| Predictedtwo hybrid | FSW = 0.0145
| Unknown | PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.5446
| Unknown | ZINC ION BINDING |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.4481
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT5G04990
| Predictedtwo hybrid | FSW = 0.0216
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.4730
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT1G28060
| Predictedtwo hybridtwo hybrid | FSW = 0.0031
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.3759
| Unknown | HISTONE H2B PUTATIVE |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.4729
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT3G16050
| PredictedAffinity Capture-MS | FSW = 0.2196
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.4755
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.4501
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.6070
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.3952
| Unknown | PSF2 |
| AT1G03910
| Predictedtwo hybridtwo hybrid | FSW = 0.0344
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
| AT1G27880
| Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | ATP-DEPENDENT DNA HELICASE PUTATIVE |
| AT1G56450
| Predictedtwo hybridtwo hybrid | FSW = 0.0097
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G11000
| Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | ATMAK10 ACETYLTRANSFERASE |
| AT2G17250
| Predictedtwo hybridtwo hybrid | FSW = 0.0144
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT2G32220
| Predictedtwo hybrid | FSW = 0.0307
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
| AT3G03110
| Predictedtwo hybridtwo hybrid | FSW = 0.0024
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
| AT5G41770
| Predictedtwo hybridtwo hybrid | FSW = 0.0323
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G47240
| Predictedtwo hybridtwo hybrid | FSW = 0.0123
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
| AT5G49930
| Predictedtwo hybridtwo hybrid | FSW = 0.0237
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT2G47110 | Predictedtwo hybridtwo hybrid | FSW = 0.0061
| Unknown | UBQ6 PROTEIN BINDING |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.1727
| Unknown | UNKNOWN PROTEIN |
| AT2G17620
| PredictedAffinity Capture-MS | FSW = 0.3139
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.4977
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.5078
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1104
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.5458
| Unknown | UNKNOWN PROTEIN |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.5601
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.5435
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.6249
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.4863
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0745
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G41530
| PredictedAffinity Capture-MS | FSW = 0.2124
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.3465
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.5355
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.4022
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.4090
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G30842
| PredictedAffinity Capture-MS | FSW = 0.3763
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.4264
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.5882
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.2864
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.3890
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G15070
| PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.5423
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.4259
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.4844
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G53730
| PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | HISTONE H4 |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.3608
| Unknown | ATATG18A |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.4715
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.4043
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.3262
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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