Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27710 - ( 60S acidic ribosomal protein P2 (RPP2B) )

59 Proteins interacs with AT2G27710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.5276

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.4309

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.4542

Class C:

plasma membrane

nucleus

 EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.2497

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.5378

Class C:

plasma membrane

nucleus

 RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2770

Class C:

plasma membrane

nucleus

 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.5086

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.3516

Class C:

plasma membrane

nucleus

 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.5253

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.1724

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.4004

Class C:

plasma membrane

nucleus

 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.4642

Class C:

plasma membrane

nucleus

 60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.4392

Class C:

plasma membrane

nucleus

 40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.3349

Class C:

plasma membrane

 ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G01100

Predicted

Affinity Capture-MS

FSW = 0.0615

Class C:

plasma membrane

 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A)
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.3624

Class C:

plasma membrane

 RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3306

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.4800

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.4952

Class C:

plasma membrane

 40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G12110

Predicted

interaction prediction

interologs mapping

FSW = 0.0043

Class C:

plasma membrane

 ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G47700

Predicted

two hybrid

Co-expression

FSW = 0.0139

Class C:

plasma membrane

 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.4931

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.4492

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.5614

Class C:

plasma membrane

 STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230

Predicted

Affinity Capture-MS

FSW = 0.4545

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT1G41880

Predicted

Affinity Capture-MS

FSW = 0.2435

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.4213

Class C:

plasma membrane

 60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.2851

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.5120

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G79440

Predicted

two hybrid

interaction prediction

FSW = 0.0184

Class C:

nucleus

 ALDH5F1 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ NAD OR NADH BINDING / SUCCINATE-SEMIALDEHYDE DEHYDROGENASE
AT2G27720

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0369

Class C:

nucleus

 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2A)
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.4238

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G54610

Predicted

Affinity Capture-MS

FSW = 0.0053

Class C:

nucleus

 GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G06700

Predicted

Affinity Capture-MS

FSW = 0.3974

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT1G19120

Predicted

Affinity Capture-RNA

FSW = 0.0212

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2198

Class C:

nucleus

 EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.4831

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.3427

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT3G16810

Predicted

Affinity Capture-MS

FSW = 0.1139

Class C:

nucleus

 APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G48870

Predicted

Affinity Capture-RNA

FSW = 0.0280

Class C:

nucleus

 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.5081

Unknown

 60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.3299

Unknown

 60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT2G35690

Predicted

two hybrid

two hybrid

FSW = 0.0066

Unknown

 ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.3427

Unknown

 RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.5438

Unknown

 60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G79570

Predicted

two hybrid

FSW = 0.0645

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT5G16870

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0123

Unknown

 AMINOACYL-TRNA HYDROLASE
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0591

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G18830Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0649

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G22400

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0103

Unknown

 NOL1/NOP2/SUN FAMILY PROTEIN
AT5G13570

Predicted

Affinity Capture-RNA

FSW = 0.0375

Unknown

 DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.4298

Unknown

 60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.5263

Unknown

 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.4180

Unknown

 60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.4129

Unknown

 RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58575

Predicted

two hybrid

FSW = 0.0260

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT5G44320

Predicted

two hybrid

Co-expression

FSW = 0.0143

Unknown

 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE
AT2G40010

Predicted

two hybrid

FSW = 0.0248

Unknown

 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT3G63460

Predicted

interaction prediction

FSW = 0.0248

Unknown

 WD-40 REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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