Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40010 - ( 60S acidic ribosomal protein P0 (RPP0A) )
56 Proteins interacs with AT2G40010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2562
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0086
| Unknown | HISTONE H4 |
AT1G07810 | PredictedPhenotypic Enhancement | FSW = 0.0154
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT1G01100 | Predictedtwo hybridtwo hybrid | FSW = 0.0645
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT2G43160 | Predictedtwo hybrid | FSW = 0.0194
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G11250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0749
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0C) |
AT3G62870 | PredictedAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-Westerntwo hybridAffinity Capture-MSsynthetic growth defect | FSW = 0.0128
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0192
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT2G45960 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.0184
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G24360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0226
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT2G27710 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT1G05500 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | NTMC2T21 |
AT4G18800 | Predictedtwo hybridReconstituted Complex | FSW = 0.0047
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G34430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0254
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G54280 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT5G54910 | PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G05780 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G70190 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G17620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0094
| Unknown | GLYCINE-RICH PROTEIN |
AT2G46520 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT2G20560 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | HISTONE H2B PUTATIVE |
AT2G44530 | Predictedinterologs mapping | FSW = 0.0231
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT2G47090 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G45240 | PredictedPhenotypic Enhancement | FSW = 0.0136
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G62960 | Predictedtwo hybridReconstituted Complex | FSW = 0.0414
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G16370 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G29400 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0083
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G52980 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G01160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0479
| Unknown | UNKNOWN PROTEIN |
AT1G08410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0489
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G13640 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | ATRLI1 TRANSPORTER |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G65990 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN |
AT2G03820 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT5G08420 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0386
| Unknown | RNA BINDING |
AT4G28200 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT3G10530 | PredictedAffinity Capture-MS | FSW = 0.0341
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G49930 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G13224 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G54170 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | CID3 (CTC-INTERACTING DOMAIN 3) |
AT1G21160 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G10170 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G01960 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454