Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20560 - ( DNAJ heat shock family protein )
31 Proteins interacs with AT2G20560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12580 | PredictedReconstituted ComplexAffinity Capture-WesternProtein-peptideReconstituted Complexinteraction prediction | FSW = 0.0451
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G22110 | Predictedinterologs mapping | FSW = 0.0142
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G19980 | Predictedinterologs mapping | FSW = 0.0066
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G33340 | PredictedCo-purification | FSW = 0.0142
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G22060 | Predictedinterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0468
| Unknown | ATJ2 PROTEIN BINDING |
AT4G14350 | Predictedinteraction prediction | FSW = 0.0149
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G45490 | Predictedbiochemical | FSW = 0.0094
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT1G56170 | Predictedtwo hybridtwo hybrid | FSW = 0.0224
| Unknown | NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G37890 | PredictedGene fusion method | FSW = 0.1351
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G26980 | Predictedtwo hybridtwo hybrid | FSW = 0.0381
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT1G71270 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | POK (POKY POLLEN TUBE) |
AT3G26618 | Predictedtwo hybridtwo hybrid | FSW = 0.0275
| Unknown | ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3) TRANSLATION RELEASE FACTOR |
AT1G26665 | Predictedtwo hybridtwo hybrid | FSW = 0.0362
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
AT5G56750 | Predictedtwo hybridtwo hybrid | FSW = 0.0595
| Unknown | NDR FAMILY PROTEIN |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G30840 | PredictedAffinity Capture-MS | FSW = 0.1176
| Unknown | ATPUP4 PURINE TRANSMEMBRANE TRANSPORTER |
AT1G79210 | Predictedinterologs mapping | FSW = 0.0209
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT3G01090 | Predictedbiochemical | FSW = 0.0149
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT4G33080 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G13290 | Predictedtwo hybrid | FSW = 0.0735
| Unknown | DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR |
AT5G25530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3039
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G59725 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3427
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G01390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1614
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G28480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT3G08910 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2065
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G10350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1614
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G47940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1838
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G60940 | PredictedGene fusion method | FSW = 0.1001
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G08290 | PredictedGene fusion method | FSW = 0.1648
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3) |
AT2G26060 | PredictedGene fusion method | FSW = 0.0693
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454