Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22060 - ( ATJ2 protein binding )
33 Proteins interacs with AT5G22060| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G61790
   | PredictedSynthetic Lethality | FSW = 0.0256
| Class C:plasma membrane | CALNEXIN 1 (CNX1) |
| AT3G12580
| PredictedPhenotypic EnhancementAffinity Capture-WesternAffinity Capture-Westernbiochemicalbiochemicalco-fractionationCo-fractionationSynthetic Lethalityinterologs mappingAffinity Capture-WesternPhenotypic EnhancementCo-purificationinterologs mappinginteraction prediction | FSW = 0.0631
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT3G44110
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3333
| Class C:plasma membrane | ATJ3 PROTEIN BINDING |
| AT1G16030
| PredictedSynthetic LethalityCo-crystal Structure | FSW = 0.0650
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
| AT3G48750
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0264
| Class C:plasma membrane | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT3G61650
| PredictedSynthetic Lethality | FSW = 0.0657
| Class C:plasma membrane | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
| AT5G52640
| PredictedAffinity Capture-Westerntwo hybridCo-purificationSynthetic Lethalityinteraction prediction | FSW = 0.0172
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT1G05570
| Predictedinteraction prediction | FSW = 0.0131
| Class C:plasma membrane | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT1G62740
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1794
| Class C:plasma membrane | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0133
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT3G62600
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0493
| Class C:plasma membrane | ATERDJ3B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT1G79930
| Predictedinterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0643
| Class C:plasma membrane | HSP91 ATP BINDING |
| AT5G07340
| Predictedinteraction prediction | FSW = 0.0741
| Unknown | CALNEXIN PUTATIVE |
| AT1G05940
| Predictedinteraction prediction | FSW = 0.0370
| Unknown | CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G11630
| PredictedSynthetic Lethality | FSW = 0.0258
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G03190
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0346
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT5G63960
| PredictedSynthetic Lethality | FSW = 0.0434
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G74250
| Predictedinterologs mapping | FSW = 0.0093
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G77720
| PredictedSynthetic Lethality | FSW = 0.0857
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G20560
| Predictedinterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0468
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT4G10130
| Predictedinterologs mapping | FSW = 0.0278
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G67190
| PredictedSynthetic Lethality | FSW = 0.0264
| Unknown | F-BOX FAMILY PROTEIN |
| AT2G13680
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0085
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
| AT2G45000
| PredictedPhenotypic Suppression | FSW = 0.0657
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
| AT3G09920
| PredictedSynthetic Lethality | FSW = 0.0374
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
| AT5G12030
| PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING |
| AT5G26680
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0352
| Unknown | ENDONUCLEASE PUTATIVE |
| AT5G66100
| PredictedAffinity Capture-Western | FSW = 0.0135
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT1G74310
| Predictedinteraction prediction | FSW = 0.0857
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G59725
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0945
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G17370
| PredictedGene fusion method | FSW = 0.0602
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
| AT5G49200
| PredictedGene fusion method | FSW = 0.1531
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ZFWD4 PROTEIN (ZFWD4) |
| AT3G59510
| PredictedGene fusion method | FSW = 0.0994
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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