Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45000 - ( EMB2766 (EMBRYO DEFECTIVE 2766) structural constituent of nuclear pore )
33 Proteins interacs with AT2G45000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01610 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT3G44110 | PredictedPhenotypic Suppression | FSW = 0.0256
| Unknown | ATJ3 PROTEIN BINDING |
AT1G11870 | PredictedPhenotypic Suppression | FSW = 0.0087
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT1G64190 | PredictedPhenotypic Suppression | FSW = 0.0150
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G53480 | Predictedin vitro | FSW = 0.0119
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G56030 | PredictedPhenotypic Suppression | FSW = 0.0201
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G22060 | PredictedPhenotypic Suppression | FSW = 0.0657
| Unknown | ATJ2 PROTEIN BINDING |
AT1G27970 | Predictedin vitroin vitro | FSW = 0.0075
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G42740 | PredictedPhenotypic Suppression | FSW = 0.0512
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
AT5G52640 | Predictedsynthetic growth defectPhenotypic Suppression | FSW = 0.0104
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G16970 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G24310 | Predictedtwo hybrid | FSW = 0.0546
| Unknown | UNKNOWN PROTEIN |
AT4G31720 | PredictedPhenotypic Suppression | FSW = 0.0047
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G26150 | PredictedPhenotypic Suppression | FSW = 0.0510
| Unknown | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G63350 | Predictedin vitrotwo hybrid | FSW = 0.0250
| Unknown | AT-HSFA7B DNA BINDING / TRANSCRIPTION FACTOR |
AT3G19210 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G17020 | Predictedin vivoin vitro | FSW = 0.0135
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT5G41670 | PredictedPhenotypic Suppression | FSW = 0.0886
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G10390 | Predictedin vitro | FSW = 0.0374
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT1G66620 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0635
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT4G20330 | Predictedin vitro | FSW = 0.0131
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G67190 | PredictedPhenotypic Suppression | FSW = 0.0264
| Unknown | F-BOX FAMILY PROTEIN |
AT1G69370 | PredictedPhenotypic Suppression | FSW = 0.1216
| Unknown | CM3 (CHORISMATE MUTASE 3) CHORISMATE MUTASE |
AT2G25710 | PredictedPhenotypic Suppression | FSW = 0.1216
| Unknown | HCS1 (HOLOCARBOXYLASE SYNTHASE) BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE/ CATALYTIC |
AT3G11450 | PredictedPhenotypic Suppression | FSW = 0.0117
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT4G15475 | PredictedPhenotypic Suppression | FSW = 0.0123
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G31120 | PredictedPhenotypic Suppression | FSW = 0.0193
| Unknown | SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0563
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G63610 | PredictedPhenotypic Suppression | FSW = 0.0191
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01720 | PredictedPhenotypic Suppression | FSW = 0.0270
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT1G26830 | PredictedPhenotypic Suppression | FSW = 0.0157
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G48630 | PredictedPhenotypic Suppression | FSW = 0.0344
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G37150 | PredictedPhenotypic Suppression | FSW = 0.0885
| Unknown | HCS2 (HOLOCARBOXYLASE SYNTHETASE 2) BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE/ CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454