Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24310 - ( unknown protein )

41 Proteins interacs with AT1G24310
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G61000

Predicted

two hybrid

interaction prediction

FSW = 0.0125

Class C:

nucleus

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT1G27970

Predicted

in vivo

FSW = 0.0162

Class C:

nucleus

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT1G11570

Predicted

in vivo

FSW = 0.0667

Class C:

nucleus

NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE
AT3G06720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0767

Class C:

nucleus

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT2G41620

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.0444

Class C:

nucleus

NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN
AT2G21160

Predicted

in vivo

FSW = 0.0200

Unknown

TRANSLOCON-ASSOCIATED PROTEIN ALPHA (TRAP ALPHA) FAMILY PROTEIN
AT5G53480

Predicted

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.0432

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G52640

Predicted

two hybrid

FSW = 0.0071

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G06390

Predicted

two hybrid

FSW = 0.0200

Unknown

GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE
AT5G25754Predicted

two hybrid

two hybrid

FSW = 0.0114

Unknown

UNKNOWN PROTEIN
AT4G11380

Predicted

two hybrid

FSW = 0.0409

Unknown

BETA-ADAPTIN PUTATIVE
AT5G56290

Predicted

two hybrid

two hybrid

FSW = 0.0349

Unknown

PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING
AT5G17550

Predicted

two hybrid

FSW = 0.0449

Unknown

PEX19-2
AT3G03490

Predicted

two hybrid

interaction prediction

FSW = 0.0376

Unknown

PEX19-1 (PEROXIN 19-1)
AT5G41210

Predicted

two hybrid

FSW = 0.0224

Unknown

ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) GLUTATHIONE TRANSFERASE
AT4G37280

Predicted

two hybrid

FSW = 0.0348

Unknown

MRG FAMILY PROTEIN
AT2G07690

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0083

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G30330

Predicted

two hybrid

two hybrid

FSW = 0.0234

Unknown

GCN5L1 FAMILY PROTEIN
AT5G10810

Predicted

two hybrid

two hybrid

FSW = 0.0202

Unknown

ATER
AT5G49400

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0606

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT5G60940

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0152

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G45000

Predicted

two hybrid

FSW = 0.0546

Unknown

EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT5G66250

Predicted

in vivo

FSW = 0.0207

Unknown

KINECTIN-RELATED
AT1G59660Predicted

Phenotypic Enhancement

FSW = 0.3512

Unknown

NUCLEOPORIN FAMILY PROTEIN
AT2G16950

Predicted

two hybrid

Affinity Capture-Western

interaction prediction

FSW = 0.0303

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G03110

Predicted

two hybrid

two hybrid

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0905

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT3G54380

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G27640

Predicted

two hybrid

Affinity Capture-MS

interaction prediction

FSW = 0.0632

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT5G19820

Predicted

two hybrid

Affinity Capture-MS

interaction prediction

FSW = 0.0419

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G62600

Predicted

two hybrid

interaction prediction

FSW = 0.0267

Unknown

TRANSPORTIN-SR-RELATED
AT5G65860

Predicted

Affinity Capture-Western

FSW = 0.0421

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT1G49760

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0226

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G54140

Predicted

two hybrid

interaction prediction

FSW = 0.0066

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G74310

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0205

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G08960Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0500

Unknown

BINDING / PROTEIN TRANSPORTER
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G02690

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0410

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT3G61150

Predicted

two hybrid

FSW = 0.0145

Unknown

HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT2G16140Predicted

two hybrid

FSW = 0.0203

Unknown

HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT5G28740

Predicted

two hybrid

interaction prediction

Co-expression

FSW = 0.0104

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT4G00720

Predicted

interaction prediction

FSW = 0.0320

Unknown

ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454