Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24310 - ( unknown protein )
41 Proteins interacs with AT1G24310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G61000 | Predictedtwo hybridinteraction prediction | FSW = 0.0125
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT1G27970 | Predictedin vivo | FSW = 0.0162
| Class C:nucleus | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT1G11570 | Predictedin vivo | FSW = 0.0667
| Class C:nucleus | NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE |
AT3G06720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0767
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G41620 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complexinteraction predictionCo-expression | FSW = 0.0444
| Class C:nucleus | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
AT2G21160 | Predictedin vivo | FSW = 0.0200
| Unknown | TRANSLOCON-ASSOCIATED PROTEIN ALPHA (TRAP ALPHA) FAMILY PROTEIN |
AT5G53480 | PredictedAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.0432
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G06390 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT5G25754 | Predictedtwo hybridtwo hybrid | FSW = 0.0114
| Unknown | UNKNOWN PROTEIN |
AT4G11380 | Predictedtwo hybrid | FSW = 0.0409
| Unknown | BETA-ADAPTIN PUTATIVE |
AT5G56290 | Predictedtwo hybridtwo hybrid | FSW = 0.0349
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT5G17550 | Predictedtwo hybrid | FSW = 0.0449
| Unknown | PEX19-2 |
AT3G03490 | Predictedtwo hybridinteraction prediction | FSW = 0.0376
| Unknown | PEX19-1 (PEROXIN 19-1) |
AT5G41210 | Predictedtwo hybrid | FSW = 0.0224
| Unknown | ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) GLUTATHIONE TRANSFERASE |
AT4G37280 | Predictedtwo hybrid | FSW = 0.0348
| Unknown | MRG FAMILY PROTEIN |
AT2G07690 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0083
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G30330 | Predictedtwo hybridtwo hybrid | FSW = 0.0234
| Unknown | GCN5L1 FAMILY PROTEIN |
AT5G10810 | Predictedtwo hybridtwo hybrid | FSW = 0.0202
| Unknown | ATER |
AT5G49400 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0606
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT5G60940 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0152
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G45000 | Predictedtwo hybrid | FSW = 0.0546
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G66250 | Predictedin vivo | FSW = 0.0207
| Unknown | KINECTIN-RELATED |
AT1G59660 | PredictedPhenotypic Enhancement | FSW = 0.3512
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT2G16950 | Predictedtwo hybridAffinity Capture-Westerninteraction prediction | FSW = 0.0303
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G03110 | Predictedtwo hybridtwo hybridAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0905
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G27640 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0632
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G19820 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0419
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G62600 | Predictedtwo hybridinteraction prediction | FSW = 0.0267
| Unknown | TRANSPORTIN-SR-RELATED |
AT5G65860 | PredictedAffinity Capture-Western | FSW = 0.0421
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G49760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0226
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G54140 | Predictedtwo hybridinteraction prediction | FSW = 0.0066
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G74310 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0205
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G08960 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0500
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G02690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0410
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT3G61150 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G16140 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G28740 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0104
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT4G00720 | Predictedinteraction prediction | FSW = 0.0320
| Unknown | ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454