Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27640 - ( importin beta-2 subunit family protein )
72 Proteins interacs with AT4G27640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0600
| Unknown | HISTONE H4 |
AT2G37270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0269
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0319
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G23670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0389
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G05940 | Predictedinteraction prediction | FSW = 0.0178
| Unknown | CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT1G64790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0983
| Unknown | BINDING |
AT1G58030 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G22845 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0225
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT3G04840 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT5G59690 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.1003
| Unknown | HISTONE H4 |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0647
| Unknown | DNA HELICASE PUTATIVE |
AT5G03290 | PredictedAffinity Capture-MS | FSW = 0.1004
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G30580 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.1401
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT5G53460 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT2G31810 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G53480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0452
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G58230 | PredictedReconstituted Complex | FSW = 0.0679
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | DNA HELICASE-RELATED |
AT5G20010 | PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.0272
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT4G34670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0288
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G39460 | PredictedAffinity Capture-Western | FSW = 0.0442
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G33370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0454
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT1G12920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0076
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT1G57720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0128
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT1G03280 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G24310 | Predictedtwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0632
| Unknown | UNKNOWN PROTEIN |
AT5G37720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0219
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0418
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G37470 | PredictedReconstituted Complex | FSW = 0.0358
| Unknown | HISTONE H2B PUTATIVE |
AT4G26910 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0430
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT3G09810 | PredictedAffinity Capture-MS | FSW = 0.0859
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G63860 | PredictedAffinity Capture-MS | FSW = 0.0845
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G20850 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G66740 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0261
| Unknown | SGA2 |
AT5G38110 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT3G46320 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0713
| Unknown | HISTONE H4 |
AT3G55280 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0386
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G59660 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1053
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT2G16950 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1168
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G33240 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT3G09920 | PredictedSynthetic Rescue | FSW = 0.0085
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0219
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G10390 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted Complexsynthetic growth defect | FSW = 0.0807
| Unknown | HISTONE H3 |
AT5G10400 | PredictedReconstituted ComplexReconstituted Complexsynthetic growth defectAffinity Capture-Western | FSW = 0.0827
| Unknown | HISTONE H3 |
AT5G15920 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | STRUCTURAL MAINTENANCE OF CHROMOSOMES (SMC) FAMILY PROTEIN (MSS2) |
AT5G19610 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | SEC7 DOMAIN-CONTAINING PROTEIN |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0092
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G23395 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST CONTAINS INTERPRO DOMAIN/S CHCH (INTERPROIPR010625) HAS 224 BLAST HITS TO 224 PROTEINS IN 106 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 109 FUNGI - 94 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G55190 | PredictedAffinity Capture-MS | FSW = 0.0502
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G56740 | PredictedReconstituted Complex | FSW = 0.1048
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G61770 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G19820 | PredictedPhenotypic Enhancementinteraction prediction | FSW = 0.1321
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G02530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0263
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G17270 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G02690 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0450
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT3G48780 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT1G04480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0365
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G01960 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0246
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G10390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0817
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT1G09200 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0627
| Unknown | HISTONE H3 |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0395
| Unknown | MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454