Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37470 - ( histone H2B putative )
149 Proteins interacs with AT2G37470| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.4493
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G63130
   | PredictedReconstituted Complex | FSW = 0.0210
| Class C:nucleus | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
| AT5G59690 | PredictedAffinity Capture-MSDosage Growth DefectReconstituted ComplexAffinity Capture-MS | FSW = 0.0832
| Class C:nucleus | HISTONE H4 |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.4631
| Class C:nucleus | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.4009
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.4208
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.3966
| Class C:nucleus | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.5147
| Class C:nucleus | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT1G16970
| PredictedAffinity Capture-MS | FSW = 0.0272
| Class C:nucleus | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
| AT4G26720
| PredictedAffinity Capture-MS | FSW = 0.0242
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G24490
| PredictedAffinity Capture-MS | FSW = 0.0200
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
| AT3G54610
| Predictedbiochemical | FSW = 0.0825
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT3G13445
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1733
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT3G54280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0446
| Class C:nucleus | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.4757
| Class C:nucleus | HTA6 DNA BINDING |
| AT4G10710
| PredictedAffinity Capture-MS | FSW = 0.0627
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.4459
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT2G34440
| PredictedAffinity Capture-MS | FSW = 0.0198
| Class C:nucleus | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
| AT4G38130
| Predictedsynthetic growth defect | FSW = 0.0129
| Class C:nucleus | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
| AT2G40290
| PredictedAffinity Capture-MS | FSW = 0.0145
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT3G57300
| PredictedAffinity Capture-MS | FSW = 0.0275
| Class C:nucleus | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT4G31720
| PredictedAffinity Capture-MS | FSW = 0.0571
| Class C:nucleus | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT4G25340
| PredictedAffinity Capture-Western | FSW = 0.0102
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| AT5G08630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0509
| Class C:nucleus | DDT DOMAIN-CONTAINING PROTEIN |
| AT3G17590
| PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0072
| Class C:nucleus | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
| AT5G18620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0477
| Class C:nucleus | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
| AT4G32470
| PredictedAffinity Capture-MS | FSW = 0.4755
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT3G12580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0898
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.4319
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.4735
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G54270
| PredictedAffinity Capture-MS | FSW = 0.0577
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.3486
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT4G14800
| PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G20390
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2164
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.4969
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.4509
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.4211
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.5172
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G22780
| PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT5G24400
| PredictedAffinity Capture-MS | FSW = 0.2273
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
| AT2G31170
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2034
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT4G26970
| PredictedAffinity Capture-MS | FSW = 0.1727
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT1G21640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0488
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.4968
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.2881
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G51040
| PredictedAffinity Capture-MS | FSW = 0.1301
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.4152
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT5G53480
| PredictedAffinity Capture-Western | FSW = 0.0139
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT2G14120
| PredictedAffinity Capture-MS | FSW = 0.0685
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT5G52640
| Predictedtwo hybrid | FSW = 0.0222
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT3G55810
| PredictedAffinity Capture-MS | FSW = 0.0493
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT4G27270
| PredictedReconstituted Complex | FSW = 0.0069
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.1315
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT4G36860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5155
| Unknown | ZINC ION BINDING |
| AT4G26110
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0506
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT5G19990
| PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.3697
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G50310
| PredictedAffinity Capture-MS | FSW = 0.2424
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.4563
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G13320
| PredictedAffinity Capture-MS | FSW = 0.1436
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT4G22120
| PredictedAffinity Capture-MS | FSW = 0.1554
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.3497
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.4333
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.3759
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.4057
| Unknown | BINDING |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.3800
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.4793
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT2G14580
| PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | ATPRB1 |
| AT4G25780
| PredictedAffinity Capture-MS | FSW = 0.1521
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT3G08730
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1191
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G16050
| PredictedAffinity Capture-MS | FSW = 0.2898
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT5G41150
| PredictedPhenotypic Enhancement | FSW = 0.0111
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
| AT4G13460
| Predictedbiochemical | FSW = 0.0146
| Unknown | SUVH9 HISTONE-LYSINE N-METHYLTRANSFERASE/ ZINC ION BINDING |
| AT4G16420
| PredictedPhenotypic Suppression | FSW = 0.0161
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT3G28730
| PredictedAffinity Capture-MS | FSW = 0.0478
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
| AT5G63860
| PredictedAffinity Capture-MS | FSW = 0.0603
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.4933
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.4369
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.5212
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.3982
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G08880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0994
| Unknown | H2AXA DNA BINDING |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.3892
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.3782
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.2917
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G26170 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0520
| Unknown | BINDING / PROTEIN TRANSPORTER |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.3992
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G49980
| PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
| AT1G51770
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5368
| Unknown | UNKNOWN PROTEIN |
| AT1G52740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0521
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.3220
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.5015
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.4985
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.4466
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G78870
| PredictedPhenotypic Enhancement | FSW = 0.0077
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G16950
| PredictedReconstituted Complex | FSW = 0.0093
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT2G17620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1958
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.3016
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.3205
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT1G26140
| PredictedAffinity Capture-MS | FSW = 0.0752
| Unknown | UNKNOWN PROTEIN |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G53900
| PredictedAffinity Capture-MS | FSW = 0.0854
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.4824
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT2G02760
| Predictedbiochemical | FSW = 0.0218
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0679
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G36930
| PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G41530
| PredictedAffinity Capture-MS | FSW = 0.2617
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT3G01160
| PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | UNKNOWN PROTEIN |
| AT3G06670
| PredictedAffinity Capture-MS | FSW = 0.0386
| Unknown | BINDING |
| AT3G10530
| PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G11900
| PredictedAffinity Capture-MS | FSW = 0.1588
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.4199
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G49880
| PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G53510
| PredictedAffinity Capture-MS | FSW = 0.2354
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT4G25540
| PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
| AT4G27640
| PredictedReconstituted Complex | FSW = 0.0358
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
| AT4G33070
| PredictedAffinity Capture-MS | FSW = 0.0584
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.2904
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G10270
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0346
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
| AT5G10790
| PredictedPhenotypic Suppression | FSW = 0.0334
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
| AT5G15070
| PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G19150
| PredictedAffinity Capture-MS | FSW = 0.1492
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G19820
| PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4545
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G27640
| PredictedAffinity Capture-MS | FSW = 0.0845
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G43500
| PredictedAffinity Capture-Western | FSW = 0.0321
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
| AT5G54200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2845
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G58410
| Predictedsynthetic growth defect | FSW = 0.0462
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT5G63670
| Predictedinterologs mapping | FSW = 0.0743
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
| AT5G67380
| PredictedAffinity Capture-MS | FSW = 0.1549
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.4803
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.3906
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.5237
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.4116
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.4201
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.4230
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.3707
| Unknown | ATATG18A |
| AT4G09760
| PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | CHOLINE KINASE PUTATIVE |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.4549
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.3383
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G35620
| PredictedAffinity Capture-MS | FSW = 0.1579
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.4545
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.4933
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G10400 | PredictedReconstituted Complex | FSW = 0.1002
| Unknown | HISTONE H3 |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.4108
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.4141
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G44750
| PredictedPhenotypic Enhancement | FSW = 0.0118
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
| AT5G57330
| PredictedAffinity Capture-MS | FSW = 0.0922
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
| AT5G60040
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0112
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
| AT2G39840
| Predictedsynthetic growth defect | FSW = 0.0121
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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