Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78870 - ( UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) protein binding / ubiquitin-protein ligase )
49 Proteins interacs with AT1G78870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G16890 | Experimentalpull down | FSW = 0.6979
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT5G27600 | Experimental | FSW = 0.0181
| Unknown | LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) LONG-CHAIN-FATTY-ACID-COA LIGASE/ PROTEIN BINDING |
AT1G28480 | Experimental | FSW = 0.0280
| Unknown | GRX480 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT1G70660 | Experimentalpull downinteraction detection methodtwo hybrid | FSW = 0.2149
| Unknown | MMZ2 (MMS ZWEI HOMOLOGE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G23260 | Experimentalpull downtwo hybridReconstituted Complexin vitro | FSW = 0.2612
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G36060 | Experimentalpull downtwo hybrid | FSW = 0.0764
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT3G52560 | Experimentalpull downtwo hybridReconstituted Complexin vitro | FSW = 0.0612
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
YGL087C | Experimentaltwo hybrid | FSW = 0.1132
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
ETG7336 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0367
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G14420 | Experimentaltwo hybrid | FSW = 0.0379
| Unknown | RGLG2 (RING DOMAIN LIGASE2) UBIQUITIN-PROTEIN LIGASE |
AT1G36340 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.4055
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT5G43530 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninteraction predictionEnriched domain pair | FSW = 0.0866
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G11630 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT2G30110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0433
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT1G64230 | PredictedShared biological functionGene neighbors methodPhylogenetic profile method | FSW = 0.2396
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT4G32830 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0272
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G07950 | PredictedPhenotypic Enhancement | FSW = 0.0110
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT3G20060 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2006
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
AT2G37470 | PredictedPhenotypic Enhancement | FSW = 0.0077
| Unknown | HISTONE H2B PUTATIVE |
AT3G13550 | PredictedPhylogenetic profile method | FSW = 0.2630
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G38470 | PredictedPhenotypic Enhancement | FSW = 0.0123
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G62540 | Predictedtwo hybrid | FSW = 0.3462
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
AT4G01270 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G04020 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0758
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G11930 | PredictedPhenotypic Enhancement | FSW = 0.0340
| Unknown | ALANINE RACEMASE FAMILY PROTEIN |
AT1G17145 | PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G67500 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0748
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G49980 | PredictedPhenotypic Enhancement | FSW = 0.1226
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT1G55915 | PredictedPhenotypic Enhancement | FSW = 0.1274
| Unknown | ZINC ION BINDING |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0033
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G18860 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0392
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0255
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT2G26970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0357
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT4G25120 | PredictedSynthetic Rescue | FSW = 0.0575
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT2G16740 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.0918
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G08690 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.3232
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G56150 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2586
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT1G45050 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.1563
| Unknown | ATUBC2-1 UBIQUITIN-PROTEIN LIGASE |
AT3G55380 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2501
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT1G63800 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.1000
| Unknown | UBC5 (UBIQUITIN-CONJUGATING ENZYME 5) UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedPhylogenetic profile method | FSW = 0.1582
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G46030 | PredictedPhylogenetic profile method | FSW = 0.1978
| Unknown | UBC6 (UBIQUITIN-CONJUGATING ENZYME 6) UBIQUITIN-PROTEIN LIGASE |
AT5G42990 | PredictedPhylogenetic profile method | FSW = 0.3879
| Unknown | UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT5G53300 | PredictedPhylogenetic profile method | FSW = 0.2771
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G25760 | PredictedPhylogenetic profile method | FSW = 0.3834
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedPhylogenetic profile method | FSW = 0.2216
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT2G32790 | PredictedPhylogenetic profile method | FSW = 0.1910
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G08700 | PredictedPhylogenetic profile method | FSW = 0.3301
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT2G35635 | PredictedGene fusion method | FSW = 0.0679
| Unknown | UBQ7 PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454