Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43530 - ( SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein )

66 Proteins interacs with AT5G43530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02520

Predicted

Phenotypic Suppression

FSW = 0.0288

Class C:

plastid

 GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G50920

Predicted

two hybrid

FSW = 0.0155

Class C:

plastid

 CLPC1 ATP BINDING / ATP-DEPENDENT PEPTIDASE/ ATPASE
AT5G06290

Predicted

two hybrid

FSW = 0.0054

Class C:

plastid

 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT2G28190

Predicted

Synthetic Lethality

FSW = 0.2500

Class C:

plastid

 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1253

Class C:

plastid

 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G12520

Predicted

synthetic growth defect

FSW = 0.2823

Class C:

plastid

 ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G01610

Predicted

two hybrid

FSW = 0.0177

Class C:

nucleus

 CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G08130

Predicted

Phenotypic Enhancement

FSW = 0.1218

Class C:

nucleus

 ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.0905

Class C:

nucleus

 RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G12480

Predicted

two hybrid

FSW = 0.0459

Class C:

nucleus

 NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR
AT5G41580

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0803

Class C:

nucleus

 ZINC ION BINDING
AT1G08370

Predicted

two hybrid

FSW = 0.0155

Class C:

nucleus

 DCP1 (DECAPPING 1) M7G(5)PPPN DIPHOSPHATASE/ PROTEIN HOMODIMERIZATION
AT5G08190

Predicted

two hybrid

FSW = 0.0661

Class C:

nucleus

 NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR
AT1G75230

Predicted

Phenotypic Enhancement

FSW = 0.0969

Class C:

nucleus

 HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT1G72050

Predicted

Phenotypic Enhancement

FSW = 0.0244

Class C:

nucleus

 TFIIIA (TRANSCRIPTION FACTOR IIIA) 5S RDNA BINDING / 5S RRNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G05120

Predicted

Phenotypic Enhancement

FSW = 0.0272

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G11510

Predicted

two hybrid

FSW = 0.0451

Class C:

nucleus

 MYB3R-4 (MYB DOMAIN PROTEIN 3R-4) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT1G07370

Predicted

Phenotypic Enhancement

two hybrid

two hybrid

interologs mapping

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.2965

Class C:

nucleus

 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT3G19210

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2896

Class C:

nucleus

 ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0394

Class C:

nucleus

 TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT5G64630

Predicted

Phenotypic Enhancement

FSW = 0.1742

Class C:

nucleus

 FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G01040

Predicted

Phenotypic Suppression

FSW = 0.0736

Class C:

nucleus

 DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT2G44950

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1722

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G41150

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.2197

Unknown

 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G31970

Predicted

synthetic growth defect

Synthetic Lethality

interaction prediction

FSW = 0.2699

Unknown

 RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

synthetic growth defect

FSW = 0.2773

Unknown

 XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2846

Unknown

 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G19910

Predicted

Phenotypic Enhancement

Synthetic Rescue

two hybrid

FSW = 0.1646

Unknown

 SOH1 FAMILY PROTEIN
AT2G42120

Predicted

synthetic growth defect

FSW = 0.0785

Unknown

 POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G05210

Predicted

Phenotypic Enhancement

FSW = 0.0813

Unknown

 ERCC1 5-FLAP ENDONUCLEASE
AT5G54260

Predicted

synthetic growth defect

FSW = 0.2724

Unknown

 MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20850

Predicted

synthetic growth defect

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1807

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT4G32910

Predicted

two hybrid

FSW = 0.0166

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT5G20620Predicted

two hybrid

FSW = 0.0376

Unknown

 UBQ4 PROTEIN BINDING
AT1G15130

Predicted

two hybrid

FSW = 0.0110

Unknown

 HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT1G04020

Predicted

Phenotypic Enhancement

two hybrid

two hybrid

Phenotypic Enhancement

Affinity Capture-Western

FSW = 0.4579

Unknown

 BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730Predicted

synthetic growth defect

Synthetic Lethality

interaction prediction

FSW = 0.2109

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G10930

Predicted

synthetic growth defect

FSW = 0.3089

Unknown

 RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G23260

Predicted

Phenotypic Enhancement

FSW = 0.2502

Unknown

 MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G24290

Predicted

synthetic growth defect

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1488

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29150

Predicted

Phenotypic Enhancement

FSW = 0.0585

Unknown

 ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G49980

Predicted

Phenotypic Enhancement

FSW = 0.1591

Unknown

 DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT1G61040

Predicted

Phenotypic Enhancement

FSW = 0.0371

Unknown

 VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G67190

Predicted

synthetic growth defect

FSW = 0.2896

Unknown

 F-BOX FAMILY PROTEIN
AT1G67500

Predicted

Synthetic Rescue

Synthetic Lethality

FSW = 0.2784

Unknown

 ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G78870

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

interaction prediction

Enriched domain pair

FSW = 0.0866

Unknown

 UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0933

Unknown

 EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G44580

Predicted

synthetic growth defect

FSW = 0.2598

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G02820

Predicted

synthetic growth defect

Synthetic Lethality

interaction prediction

FSW = 0.2081

Unknown

 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G10070

Predicted

Phenotypic Suppression

FSW = 0.0356

Unknown

 TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G18860

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1963

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G42660

Predicted

synthetic growth defect

Synthetic Lethality

interaction prediction

FSW = 0.3225

Unknown

 NUCLEOTIDE BINDING
AT4G25120Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

two hybrid

FSW = 0.3211

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1858

Unknown

 MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.1018

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.0155

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G26680

Predicted

synthetic growth defect

FSW = 0.2814

Unknown

 ENDONUCLEASE PUTATIVE
AT5G43500

Predicted

synthetic growth defect

FSW = 0.2417

Unknown

 ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT1G18090

Predicted

Synthetic Lethality

FSW = 0.1129

Unknown

 EXONUCLEASE PUTATIVE
AT1G55915

Predicted

Phenotypic Enhancement

FSW = 0.1470

Unknown

 ZINC ION BINDING
AT1G66740

Predicted

synthetic growth defect

FSW = 0.1536

Unknown

 SGA2
AT3G57870

Predicted

two hybrid

FSW = 0.0526

Unknown

 SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT4G16970

Predicted

Phenotypic Enhancement

FSW = 0.0940

Unknown

 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1908

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G48640

Predicted

Phenotypic Suppression

FSW = 0.1190

Unknown

 CYCLIN FAMILY PROTEIN
AT5G63610

Predicted

Phenotypic Suppression

FSW = 0.0371

Unknown

 CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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