Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08130 - ( ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP binding / DNA binding / DNA ligase (ATP) )
25 Proteins interacs with AT1G08130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.1218
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G21690 | PredictedAffinity Capture-Western | FSW = 0.2849
| Class C:nucleus | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.1304
| Class C:nucleus | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G10710 | Predictedsynthetic growth defectinteraction prediction | FSW = 0.0281
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | Predictedsynthetic growth defect | FSW = 0.0362
| Class C:nucleus | GTC2 |
AT2G29570 | Predictedin vitroReconstituted ComplexCo-expression | FSW = 0.1355
| Class C:nucleus | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-crystal StructureReconstituted Complexinteraction predictionCo-expression | FSW = 0.1705
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT4G01370 | PredictedPhenotypic Enhancement | FSW = 0.0555
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.0886
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0122
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT2G31970 | PredictedSynthetic Lethality | FSW = 0.1111
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130 | Predictedinterologs mappingReconstituted Complexbiochemical | FSW = 0.2344
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G54260 | Predictedtwo hybrid | FSW = 0.1543
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.0848
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0511
| Unknown | SNL5 (SIN3-LIKE 5) |
AT5G26680 | PredictedReconstituted ComplexCo-expression | FSW = 0.1095
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27740 | PredictedSynthetic LethalityAffinity Capture-WesternCo-expression | FSW = 0.1587
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.0810
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT1G08840 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingtwo hybrid | FSW = 0.1637
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G63160 | PredictedAffinity Capture-Western | FSW = 0.2297
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G77470 | PredictedAffinity Capture-Western | FSW = 0.2374
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT4G34910 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0088
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G22010 | PredictedAffinity Capture-Western | FSW = 0.3467
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G15540 | PredictedSynthetic Lethality | FSW = 0.0301
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G49250 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1429
| Unknown | ATP DEPENDENT DNA LIGASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454