Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01370 - ( ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP kinase/ kinase )
99 Proteins interacs with AT4G01370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G29810 | Experimentalprotein kinase assayprotein complementation assaytwo hybridsplit-reporter assay | FSW = 0.1146
| Class B:unclearplasma membranecytosolClass D:cytosol (p = 0.67) | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT3G57150 | Experimental | FSW = 0.0068
| Class B:unclearnucleusClass D:nucleus (p = 0.78)cytosol (p = 0.67) | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT2G38470 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0204
| Class B:unclearnucleusClass D:nucleus (p = 0.78) | WRKY33 TRANSCRIPTION FACTOR |
AT2G30250 | Experimentalprotein kinase assay | FSW = 0.0341
| Class B:unclearnucleusClass D:nucleus (p = 0.78) | WRKY25 TRANSCRIPTION FACTOR |
AT3G18690 | Experimentalpull downprotein kinase assayReconstituted ComplexAffinity Capture-Western | FSW = 0.0341
| Class D:nucleus (p = 0.78) | MKS1 (MAP KINASE SUBSTRATE 1) PROTEIN BINDING |
AT4G26070 | Experimentaltwo hybridprotein kinase assayprotein complementation assaysplit-reporter assaytwo hybrid | FSW = 0.0718
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT5G56580 | Experimental | FSW = 0.0539
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT1G10210 | Experimentaltwo hybrid | FSW = 0.1069
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT4G08500 | Experimentaltwo hybrid | FSW = 0.0402
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT2G40180 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0341
| Unknown | ATHPP2C5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G30020 | Experimentaltwo hybrid | FSW = 0.0206
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT3G55270 | Experimentaltwo hybrid | FSW = 0.0341
| Unknown | MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1) MAP KINASE TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT2G06510 | PredictedPhenotypic Enhancement | FSW = 0.0425
| Class C:unclear | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G78300 | Predictedtwo hybrid | FSW = 0.0091
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G23990 | PredictedAffinity Capture-MS | FSW = 0.0023
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0068
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G13710 | PredictedPhenotypic Suppression | FSW = 0.0119
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G63130 | Predictedbiochemical | FSW = 0.0039
| Unknown | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT3G02520 | PredictedPhenotypic Enhancement | FSW = 0.0783
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G51730 | Predictedbiochemical | FSW = 0.0350
| Unknown | RWD DOMAIN-CONTAINING PROTEIN |
AT5G63110 | PredictedPhenotypic Suppression | FSW = 0.0370
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G18640 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE |
ATCG00830 | Predictedbiochemical | FSW = 0.0031
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT5G56030 | Predictedbiochemical | FSW = 0.0158
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT4G34460 | PredictedPhenotypic EnhancementSynthetic Rescue | FSW = 0.0229
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G71860 | PredictedbiochemicalReconstituted ComplexAffinity Capture-Westerntwo hybridbiochemical | FSW = 0.0308
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT4G18710 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2207
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT1G06390 | PredictedPhylogenetic profile method | FSW = 0.1666
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT3G57530 | Predictedbiochemical | FSW = 0.0154
| Unknown | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G57720 | Predictedbiochemical | FSW = 0.0094
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G26300 | PredictedAffinity Capture-WesternSynthetic RescueAffinity Capture-WesternColocalizationReconstituted ComplexSynthetic RescuePhenotypic Suppressioninteraction prediction | FSW = 0.0167
| Unknown | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT4G18800 | Predictedinterologs mapping | FSW = 0.0073
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT1G77210 | Predictedsynthetic growth defect | FSW = 0.0103
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G08130 | PredictedPhenotypic Enhancement | FSW = 0.0555
| Unknown | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT3G10330 | Predictedbiochemical | FSW = 0.0051
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0291
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G44900 | Predictedbiochemical | FSW = 0.0187
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0151
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.0597
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18040 | PredictedPhylogenetic profile method | FSW = 0.0635
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT4G11160 | Predictedbiochemical | FSW = 0.0101
| Unknown | TRANSLATION INITIATION FACTOR IF-2 MITOCHONDRIAL PUTATIVE |
AT2G18450 | PredictedAffinity Capture-Western | FSW = 0.0092
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0440
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT4G21710 | Predictedbiochemical | FSW = 0.0072
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G33150 | Predictedbiochemical | FSW = 0.0103
| Unknown | LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME |
AT1G06080 | Predictedbiochemical | FSW = 0.0186
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G74250 | Predictedbiochemical | FSW = 0.0071
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G11000 | Predictedbiochemical | FSW = 0.0362
| Unknown | ATMAK10 ACETYLTRANSFERASE |
AT2G27200 | Predictedbiochemical | FSW = 0.0045
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G40430 | Predictedbiochemical | FSW = 0.0147
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT2G43650 | Predictedbiochemical | FSW = 0.0051
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT3G02320 | Predictedbiochemical | FSW = 0.0097
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G10530 | Predictedbiochemical | FSW = 0.0025
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G25230 | Predictedbiochemical | FSW = 0.0069
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G52390 | Predictedbiochemical | FSW = 0.0078
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G55280 | Predictedbiochemical | FSW = 0.0013
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62240 | Predictedbiochemical | FSW = 0.0157
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0376
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.0254
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G24290 | PredictedPhenotypic Enhancement | FSW = 0.0150
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G29150 | PredictedPhenotypic Suppression | FSW = 0.0346
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G29990 | PredictedPhenotypic Suppression | FSW = 0.0306
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G59890 | PredictedPhenotypic Suppression | FSW = 0.0327
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.0382
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G72680 | Predictedinterologs mapping | FSW = 0.0076
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT5G01430 | PredictedAffinity Capture-Western | FSW = 0.0211
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.0395
| Unknown | HISTONE H3 |
AT5G22010 | PredictedPhenotypic Enhancement | FSW = 0.0316
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G49510 | PredictedPhenotypic Suppression | FSW = 0.0251
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G55090 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationReconstituted Complextwo hybridfluorescence acceptor donor pair | FSW = 0.0572
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G67320 | PredictedPhenotypic Suppression | FSW = 0.0376
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT4G03430 | Predictedbiochemical | FSW = 0.0015
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G17890 | Predictedbiochemical | FSW = 0.0094
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G11900 | Predictedbiochemical | FSW = 0.0056
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G12030 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G16870 | Predictedbiochemical | FSW = 0.0075
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT5G17570 | Predictedbiochemical | FSW = 0.0100
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT5G43500 | Predictedbiochemical | FSW = 0.0386
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G46280 | Predictedbiochemical | FSW = 0.0170
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0097
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT4G36450 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2745
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT1G07880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1597
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G59790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1279
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT2G43790 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1961
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G63330 | PredictedGene fusion methodCo-expression | FSW = 0.0503
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G14365 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0476
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN |
AT1G59580 | PredictedShared biological functionGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1443
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT5G67380 | PredictedGene fusion methodCo-expression | FSW = 0.0148
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G18170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2554
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT3G45640 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3239
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G46070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1051
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.1605
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14640 | PredictedPhylogenetic profile method | FSW = 0.2063
| Unknown | SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30980 | PredictedPhylogenetic profile method | FSW = 0.1496
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.2470
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454