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AT4G34460 - ( AGB1 (GTP BINDING PROTEIN BETA 1) GTPase/ nucleotide binding / protein binding )

72 Proteins interacs with AT4G34460

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G78300	Experimental	FSW = 0.0086	Class A: plasma membrane nucleus cytosol Class B: vacuole peroxisome golgi cytoskeleton	GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G63420	Experimental two hybrid Reconstituted Complex	FSW = 0.0268	Class A: plasma membrane golgi cytosol Class B: nucleus Class D: nucleus (p = 0.78)	AGG1 (ARABIDOPSIS GGAMMA-SUBUNIT 1) GTP BINDING
AT3G22942	Experimental pull down one hybrid Reconstituted Complex two hybrid	FSW = 0.0454	Class A: plasma membrane golgi Class B: nucleus cytosol Class D: nucleus (p = 0.78) extracellular (p = 0.86)	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)
AT2G26300	Experimental	FSW = 0.1059	Class A: plasma membrane Class B: nucleus golgi cytosol	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT5G17020	Experimental confocal microscopy	FSW = 0.0139	Class A: nucleus Class B: plasma membrane golgi cytosol Class D: extracellular (p = 0.86)	XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT1G02280	Experimental biochemical	FSW = 0.0142	Class B: plastid plasma membrane nucleus golgi cytosol	TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G55800	Experimental pull down	FSW = 0.0305	Class B: plastid plasma membrane nucleus golgi cytosol	SBPASE (SEDOHEPTULOSE-BISPHOSPHATASE) PHOSPHORIC ESTER HYDROLASE/ SEDOHEPTULOSE-BISPHOSPHATASE
AT1G19350	Experimental one hybrid	FSW = 0.0142	Class D: nucleus (p = 0.78)	BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT4G05420	Experimental two hybrid	FSW = 0.0163	Class D: nucleus (p = 0.78)	DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING
AT5G56750	Experimental Affinity Capture-Western	FSW = 0.0194	Unknown	NDR FAMILY PROTEIN
AT3G18780	Predicted Gene fusion method	FSW = 0.1785	Class C: plasma membrane nucleus	ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G09810	Predicted Gene fusion method	FSW = 0.1859	Class C: plasma membrane nucleus	ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G23190	Predicted Affinity Capture-MS	FSW = 0.0198	Class C: plasma membrane cytosol	PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT1G49240	Predicted Gene fusion method	FSW = 0.0670	Class C: plasma membrane	ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G12110	Predicted Gene fusion method	FSW = 0.0477	Class C: plasma membrane	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G37620	Predicted Gene fusion method	FSW = 0.1516	Class C: plasma membrane	ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G70730	Predicted interaction prediction	FSW = 0.0297	Class C: plasma membrane	PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT1G24510	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0790	Class C: plasma membrane	T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT5G20890	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0533	Class C: plasma membrane	CHAPERONIN PUTATIVE
AT3G53750	Predicted Gene fusion method	FSW = 0.1555	Class C: nucleus	ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G18130	Predicted Affinity Capture-MS in vitro	FSW = 0.0027	Class C: nucleus	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT4G34390	Predicted in vitro Affinity Capture-MS	FSW = 0.0069	Class C: nucleus	XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT3G02530	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0521	Class C: cytosol	CHAPERONIN PUTATIVE
AT4G01370	Predicted Phenotypic Enhancement Synthetic Rescue	FSW = 0.0229	Unknown	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT5G44780	Predicted interaction prediction	FSW = 0.0141	Unknown	UNKNOWN PROTEIN
AT5G51820	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G06690	Predicted Gene fusion method	FSW = 0.0139	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G12050	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0053	Unknown	AHA1 DOMAIN-CONTAINING PROTEIN
AT3G03600	Predicted two hybrid interaction prediction	FSW = 0.0121	Unknown	RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G46520	Predicted Gene fusion method	FSW = 0.1339	Unknown	ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G59370	Predicted Gene fusion method	FSW = 0.1854	Unknown	ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G24090	Predicted interaction prediction	FSW = 0.0068	Unknown	ACIDIC ENDOCHITINASE (CHIB1)
AT1G61770	Predicted in vitro	FSW = 0.0356	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G45790	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0169	Unknown	PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE
AT3G20050	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0502	Unknown	ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G10170	Predicted two hybrid two hybrid	FSW = 0.0063	Unknown	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G02570	Predicted two hybrid	FSW = 0.0296	Unknown	MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) MANNOSE-6-PHOSPHATE ISOMERASE
AT5G26600	Predicted two hybrid	FSW = 0.0141	Unknown	CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT1G02080	Predicted Synthetic Rescue	FSW = 0.0237	Unknown	TRANSCRIPTIONAL REGULATOR-RELATED
AT1G04170	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0083	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G07705	Predicted Synthetic Rescue	FSW = 0.0237	Unknown	TRANSCRIPTION REGULATOR
AT1G68740	Predicted interaction prediction interologs mapping two hybrid interologs mapping	FSW = 0.0592	Unknown	EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN
AT2G43790	Predicted Synthetic Rescue	FSW = 0.0103	Unknown	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G27000	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0569	Unknown	ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G45630	Predicted Synthetic Rescue	FSW = 0.0183	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G50960	Predicted Reconstituted Complex interaction prediction	FSW = 0.0197	Unknown	PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT1G20575	Predicted Synthetic Rescue	FSW = 0.0061	Unknown	DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0050	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT5G14240	Predicted Reconstituted Complex interaction prediction Enriched domain pair Co-expression	FSW = 0.0712	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK)
AT5G26360	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0380	Unknown	CHAPERONIN PUTATIVE
AT5G55090	Predicted Phenotypic Enhancement Synthetic Rescue	FSW = 0.0766	Unknown	MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G61770	Predicted interologs mapping interologs mapping	FSW = 0.0058	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT4G20020	Predicted Affinity Capture-MS	FSW = 0.0102	Unknown	UNKNOWN PROTEIN
AT5G20350	Predicted two hybrid Affinity Capture-MS interologs mapping two hybrid interaction prediction	FSW = 0.0361	Unknown	TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING
AT1G10210	Predicted Phenotypic Enhancement Synthetic Rescue	FSW = 0.0169	Unknown	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT2G18990	Predicted Reconstituted Complex	FSW = 0.0164	Unknown	TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)
AT1G67070	Predicted two hybrid	FSW = 0.0462	Unknown	DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE
AT1G14040	Predicted two hybrid	FSW = 0.0677	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SPX N-TERMINAL (INTERPROIPR004331) EXS C-TERMINAL (INTERPROIPR004342) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G032401) HAS 732 BLAST HITS TO 696 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 238 FUNGI - 246 PLANTS - 151 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G56130	Predicted Gene fusion method Co-expression	FSW = 0.1580	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G41930	Predicted Gene fusion method	FSW = 0.0275	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19210	Predicted Gene fusion method	FSW = 0.0677	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G20930	Predicted Gene fusion method	FSW = 0.0153	Unknown	CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE
AT1G08460	Predicted Gene fusion method	FSW = 0.0127	Unknown	HDA08 HISTONE DEACETYLASE
AT2G05060	Predicted Gene fusion method	FSW = 0.0268	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G50720	Predicted Gene fusion method	FSW = 0.0268	Unknown	PROTEIN KINASE PUTATIVE
AT2G37770	Predicted Gene fusion method	FSW = 0.0346	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G60080	Predicted Gene fusion method	FSW = 0.0789	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT5G08160	Predicted Gene fusion method	FSW = 0.0163	Unknown	ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G53880	Predicted Gene fusion method	FSW = 0.0081	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G25530	Predicted Gene fusion method	FSW = 0.0112	Unknown	DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT5G28840	Predicted Gene fusion method	FSW = 0.0427	Unknown	GME (GDP-D-MANNOSE 35-EPIMERASE) GDP-MANNOSE 35-EPIMERASE/ NAD OR NADH BINDING / CATALYTIC
AT3G13430	Predicted Gene fusion method	FSW = 0.0268	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT4G34460 - ( AGB1 (GTP BINDING PROTEIN BETA 1) GTPase/ nucleotide binding / protein binding )

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