Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20050 - ( ATTCP-1 ATP binding / protein binding / unfolded protein binding )
54 Proteins interacs with AT3G20050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G32950 | Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.0056
| Unknown | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G08580 | PredictedSynthetic Lethality | FSW = 0.0762
| Unknown | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT5G13490 | PredictedSynthetic Lethality | FSW = 0.0638
| Unknown | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT4G14960 | Predictedin vivosynthetic growth defectinteraction prediction | FSW = 0.0167
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20010 | PredictedPhenotypic Enhancement | FSW = 0.0265
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G49240 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0291
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G16240 | Predictedtwo hybridtwo hybridSynthetic Lethality | FSW = 0.0407
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G18140 | Predictedinterologs mapping | FSW = 0.0687
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G11870 | Predictedinterologs mapping | FSW = 0.0429
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0021
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G63110 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0149
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT4G34460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0502
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G48750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0073
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G12250 | PredictedSynthetic Lethality | FSW = 0.0273
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G12110 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0231
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G18190 | Predictedinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2161
| Unknown | CHAPERONIN PUTATIVE |
AT1G64740 | Predictedin vivo | FSW = 0.0517
| Unknown | TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G24510 | Predictedin vitroPhylogenetic profile methodCo-expression | FSW = 0.3551
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G20890 | Predictedinteraction predictionSynthetic LethalityReconstituted ComplexPhylogenetic profile methodCo-expression | FSW = 0.4122
| Unknown | CHAPERONIN PUTATIVE |
AT4G26720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0479
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G57300 | PredictedPhenotypic Enhancement | FSW = 0.0197
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G27640 | PredictedAffinity Capture-MS | FSW = 0.1026
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G28910 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT2G38560 | PredictedReconstituted Complexinterologs mappinginterologs mappingReconstituted ComplexReconstituted Complexinterologs mapping | FSW = 0.0211
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G38880 | Predictedinterologs mapping | FSW = 0.0525
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT5G25150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0278
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT3G02530 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | CHAPERONIN PUTATIVE |
AT1G17810 | PredictedPhenotypic Enhancement | FSW = 0.0042
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT5G66130 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT4G17760 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
AT3G11830 | Predictedin vitroGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2262
| Unknown | CHAPERONIN PUTATIVE |
AT5G26360 | PredictedSynthetic Lethalityin vitroCo-purificationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.3199
| Unknown | CHAPERONIN PUTATIVE |
AT3G15460 | Predictedtwo hybridtwo hybridtwo hybridReconstituted Complextwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mapping | FSW = 0.0411
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0213
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G17720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0575
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0071
| Unknown | UNKNOWN PROTEIN |
AT3G28610 | Predictedtwo hybridReconstituted Complex | FSW = 0.0472
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G04700 | Predictedinterologs mappingAffinity Capture-Westerninterologs mappingReconstituted ComplexAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternCo-crystal StructureReconstituted Complextwo hybridinterologs mappingSynthetic Rescue | FSW = 0.0198
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G18905 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0865
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G28450 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0513
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G10960 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13480 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0369
| Unknown | FY PROTEIN BINDING |
AT3G50860 | PredictedAffinity Capture-Western | FSW = 0.0537
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT1G15920 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT4G19110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0517
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0811
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT2G22040 | Predictedinterologs mapping | FSW = 0.0393
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G21170 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT3G03960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1833
| Unknown | CHAPERONIN PUTATIVE |
AT5G16070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2301
| Unknown | CHAPERONIN PUTATIVE |
AT4G18840 | PredictedGene fusion method | FSW = 0.0468
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454