Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G52360 - ( coatomer protein complex subunit beta 2 (beta prime) putative )
73 Proteins interacs with AT1G52360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08580 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT4G19640 | Predictedinterologs mapping | FSW = 0.0094
| Unknown | ARA7 GTP BINDING |
AT1G10630 | Predictedinterologs mappinginterologs mapping | FSW = 0.0780
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G27020 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G31780 | Predictedinterologs mapping | FSW = 0.1109
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | Predictedinterologs mapping | FSW = 0.0968
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT4G04910 | PredictedAffinity Capture-MS | FSW = 0.0678
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT1G56190 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT5G63840 | Predictedinterologs mapping | FSW = 0.0269
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G10920 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | ARGININOSUCCINATE LYASE PUTATIVE / ARGINOSUCCINASE PUTATIVE |
AT2G40490 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | HEME2 UROPORPHYRINOGEN DECARBOXYLASE |
AT1G11890 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0933
| Unknown | SEC22 TRANSPORTER |
AT1G13210 | Predictedinterologs mapping | FSW = 0.0568
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G62020 | Predictedin vivoAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoSynthetic Lethality | FSW = 0.1650
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT3G11400 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT1G65040 | Predictedinterologs mapping | FSW = 0.0310
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G20890 | PredictedAffinity Capture-MS | FSW = 0.0526
| Unknown | CHAPERONIN PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0111
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G75560 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0948
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G24180 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G05710 | Predictedinterologs mapping | FSW = 0.1210
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G02530 | PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | CHAPERONIN PUTATIVE |
AT3G23580 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT2G31970 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT2G34840 | Predictedin vivotwo hybrid | FSW = 0.0934
| Unknown | COATOMER PROTEIN EPSILON SUBUNIT FAMILY PROTEIN / COPE FAMILY PROTEIN |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G42830 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G54260 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G14800 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT3G20050 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G05010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1443
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED |
AT4G31480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1498
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0024
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT4G34450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1340
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT1G60970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1220
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT1G13170 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0289
| Unknown | ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING |
AT1G09580 | Predictedinterologs mappingAffinity Capture-MS | FSW = 0.0114
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G32600 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G60620 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G58180 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G10050 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G32260 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | CHOLINEPHOSPHATE CYTIDYLYLTRANSFERASE PUTATIVE / PHOSPHORYLCHOLINE TRANSFERASE PUTATIVE / CTPPHOSPHOCHOLINE CYTIDYLYLTRANSFERASE PUTATIVE |
AT2G46280 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G36290 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | UNKNOWN PROTEIN |
AT5G18200 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT2G45810 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G12270 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0295
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT2G35210 | PredictedAffinity Capture-MS | FSW = 0.1914
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G02080 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT5G52210 | Predictedinterologs mapping | FSW = 0.0713
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G13060 | Predictedinterologs mapping | FSW = 0.0151
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT4G26550 | Predictedinterologs mapping | FSW = 0.1301
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
AT4G21540 | Predictedinterologs mapping | FSW = 0.0357
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT3G50860 | Predictedinterologs mapping | FSW = 0.0992
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G03180 | Predictedinterologs mapping | FSW = 0.1077
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT2G40990 | Predictedinterologs mapping | FSW = 0.0132
| Unknown | ZINC ION BINDING |
AT2G37550 | Predictedinterologs mapping | FSW = 0.0384
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G34770 | Predictedinterologs mapping | FSW = 0.1001
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G12340 | Predictedinterologs mapping | FSW = 0.2188
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G01910 | Predictedinterologs mapping | FSW = 0.1047
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G16560 | Predictedinterologs mapping | FSW = 0.0600
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G48760 | Predictedinterologs mapping | FSW = 0.1054
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G15980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0468
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G79990 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6312
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT5G03640 | PredictedGene fusion method | FSW = 0.0351
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454