Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75560 - ( zinc knuckle (CCHC-type) family protein )
24 Proteins interacs with AT1G75560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G20550 | PredictedPhenotypic Suppression | FSW = 0.0161
| Class C:nucleus | DDL (DAWDLE) |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0392
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.0121
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0082
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0243
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0065
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G61200 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT4G30800 | Predictedbiochemical | FSW = 0.0122
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G18680 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | ATTLP11 (TUBBY LIKE PROTEIN 11) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
AT3G01090 | Predictedinterologs mapping | FSW = 0.0109
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G14240 | PredictedSynthetic Rescue | FSW = 0.0072
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G16265 | Predictedtwo hybrid | FSW = 0.0415
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G25950 | Predictedbiochemical | FSW = 0.0184
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G79990 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT4G18905 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G04230 | PredictedAffinity Capture-MS | FSW = 0.2143
| Unknown | UNKNOWN PROTEIN |
AT5G45900 | Predictedinteraction prediction | FSW = 0.0920
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454