Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18900 - ( transducin family protein / WD-40 repeat family protein )

31 Proteins interacs with AT4G18900
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G49240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0338

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G16720

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15A)
AT2G30390

Predicted

Affinity Capture-MS

FSW = 0.0112

Unknown

FC2 (FERROCHELATASE 2) FERROCHELATASE
AT3G54670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0047

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0058

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G01310

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT1G66410

Predicted

Affinity Capture-MS

FSW = 0.0052

Unknown

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT1G24510

Predicted

Affinity Capture-MS

FSW = 0.0997

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT5G20890

Predicted

Affinity Capture-MS

FSW = 0.0842

Unknown

CHAPERONIN PUTATIVE
AT1G75560

Predicted

Affinity Capture-MS

FSW = 0.0174

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT1G73150

Predicted

Gene fusion method

FSW = 0.0245

Unknown

GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3) DNA BINDING / HISTONE BINDING
AT4G35370Predicted

Phylogenetic profile method

FSW = 0.0672

Unknown

NUCLEOTIDE BINDING
AT3G05520

Predicted

Affinity Capture-MS

FSW = 0.0367

Unknown

F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN
AT3G02530

Predicted

Affinity Capture-MS

FSW = 0.0824

Unknown

CHAPERONIN PUTATIVE
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.0552

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT3G20050

Predicted

Affinity Capture-MS

FSW = 0.0811

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G46840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1016

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G47340

Predicted

Affinity Capture-MS

FSW = 0.0523

Unknown

ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT3G09670

Predicted

Affinity Capture-MS

FSW = 0.1175

Unknown

PWWP DOMAIN-CONTAINING PROTEIN
AT2G18220

Predicted

Affinity Capture-MS

FSW = 0.0620

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT4G30870

Predicted

Affinity Capture-MS

FSW = 0.0125

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT1G52930

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0966

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT5G26360

Predicted

Affinity Capture-MS

FSW = 0.0789

Unknown

CHAPERONIN PUTATIVE
AT2G36930

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0116

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G10730

Predicted

Affinity Capture-MS

FSW = 0.0294

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G75200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0471

Unknown

FLAVODOXIN FAMILY PROTEIN / RADICAL SAM DOMAIN-CONTAINING PROTEIN
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

BINDING
AT1G71790

Predicted

Affinity Capture-MS

FSW = 0.0269

Unknown

F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G04160

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G01960

Predicted

Synthetic Lethality

FSW = 0.0145

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454