Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18220 - ( INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Uncharacterised protein family UPF0120 (InterProIPR005343) BEST Arabidopsis thaliana protein match is RBL (REBELOTE) (TAIRAT3G555101) Has 4846 Blast hits to 3236 proteins in 249 species Archae - 2 Bacteria - 127 Metazoa - 2049 Fungi - 594 Plants - 200 Viruses - 69 Other Eukaryotes - 1805 (source NCBI BLink) )

73 Proteins interacs with AT2G18220
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G72440

Experimental

two hybrid

FSW = 0.5074

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G25520

Predicted

Affinity Capture-MS

FSW = 0.2653

Unknown

ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.1518

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.0719

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT1G43170

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2240

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G27850

Predicted

Affinity Capture-MS

FSW = 0.1841

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT3G07110

Predicted

Affinity Capture-MS

FSW = 0.1220

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AA)
AT3G13580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2867

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4456

Unknown

RIBOSOMAL PROTEIN-RELATED
AT2G47250

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0765

Unknown

RNA HELICASE PUTATIVE
AT5G43940

Predicted

Affinity Capture-MS

FSW = 0.1259

Unknown

HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE
AT3G01610

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3902

Unknown

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G39740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3849

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4159

Unknown

RNA BINDING
AT2G33370Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1295

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5196

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0670

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0963

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT2G44860

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3170

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4915

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2010

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G10300Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4242

Unknown

GTP-BINDING PROTEIN-RELATED
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2937

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4506

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0521

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4671

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5986

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.2177

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G08180

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0992

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G16810

Predicted

Affinity Capture-MS

FSW = 0.5948

Unknown

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5449

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G07050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.4121

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.1973

Unknown

RNA HELICASE PUTATIVE
AT2G37990

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3265

Unknown

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G18600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2831

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5244

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4900

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.5287

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3341

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G03150

Predicted

Affinity Capture-MS

FSW = 0.0223

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT1G25260

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2972

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0481

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G79150

Predicted

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6169

Unknown

BINDING
AT2G21440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5279

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5268

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G24830

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1497

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.2508

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0217

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G60860

Predicted

Synthetic Lethality

FSW = 0.0465

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G01560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6654

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G16630

Predicted

Affinity Capture-MS

FSW = 0.5804

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.2702

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G05450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5384

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3769

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4934

Unknown

PESCADILLO-RELATED
AT5G20600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4307

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G46840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4257

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G61770

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4098

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5038

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G40700

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2227

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH17)
AT4G15770

Predicted

Affinity Capture-MS

FSW = 0.4758

Unknown

RNA BINDING / PROTEIN BINDING
AT4G18905

Predicted

Affinity Capture-MS

FSW = 0.0664

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G09670

Predicted

Affinity Capture-MS

FSW = 0.1963

Unknown

PWWP DOMAIN-CONTAINING PROTEIN
AT5G02530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0707

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT4G18900

Predicted

Affinity Capture-MS

FSW = 0.0620

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.0440

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G33390

Predicted

Affinity Capture-MS

FSW = 0.1084

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN
AT1G52930

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.5818

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT1G77050Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2344

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT1G29965

Predicted

Affinity Capture-MS

FSW = 0.2032

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.1516

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G04480Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1035

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G01960

Predicted

Synthetic Lethality

FSW = 0.0507

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454