Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18600 - ( DEAD/DEAH box helicase putative )
74 Proteins interacs with AT3G18600| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2590
| Class C:nucleus | RNA BINDING |
AT4G14340
   | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0039
| Class C:nucleus | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G44860
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1746
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2184
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3618
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
| AT3G50670
| PredictedAffinity Capture-MS | FSW = 0.0061
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G21700
| PredictedAffinity Capture-MS | FSW = 0.0104
| Class C:nucleus | SGP2 GTP BINDING |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1915
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G72440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1861
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G57150
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1208
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT5G08180
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0821
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2203
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G07050
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2626
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT5G54910
| PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0663
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G16810
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2259
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G05060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0780
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1804
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT3G21540
| PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.1461
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G15550
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2677
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G33140
| PredictedSynthetic Lethality | FSW = 0.0854
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G37270
| Predictedtwo hybrid | FSW = 0.0262
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G28715
| PredictedAffinity Capture-Western | FSW = 0.0288
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
| AT3G07680
| PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G62870
| Predictedtwo hybrid | FSW = 0.0117
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT5G01820
| PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G29210
| PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
| AT5G16150
| Predictedtwo hybrid | FSW = 0.0356
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G25910
| PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.0964
| Unknown | NFU3 STRUCTURAL MOLECULE |
| AT3G57050
| PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0701
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2956
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT3G54670
| PredictedSynthetic Rescue | FSW = 0.0046
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
| AT5G03650
| PredictedPhenotypic Enhancement | FSW = 0.0329
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
| AT5G43940
| PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE |
| AT1G55690
| PredictedReconstituted Complex | FSW = 0.0632
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT5G47510
| Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0583
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT2G39480
| PredictedReconstituted Complex | FSW = 0.0189
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2390
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G01020
| Predictedco-fractionationCo-fractionation | FSW = 0.0770
| Unknown | ARV1 |
| AT2G43460
| PredictedSynthetic Lethality | FSW = 0.0434
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
| AT5G63960
| Predictedtwo hybrid | FSW = 0.0214
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G12130
| PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0266
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT3G44190
| PredictedAffinity Capture-WesternCo-purificationSynthetic LethalityReconstituted Complex | FSW = 0.1186
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
| AT4G19880
| PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
| AT5G43340
| PredictedAffinity Capture-Westerninterologs mappinginterologs mappingReconstituted Complex | FSW = 0.1655
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G61220
| Predictedtwo hybrid | FSW = 0.0426
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
| AT5G04420
| Predictedtwo hybrid | FSW = 0.0403
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
| AT5G49930
| PredictedAffinity Capture-MS | FSW = 0.1071
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G41190
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0056
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G14520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1984
| Unknown | PESCADILLO-RELATED |
| AT3G46960 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0291
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT3G24080
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0603
| Unknown | KRR1 FAMILY PROTEIN |
| AT3G09670
| PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | PWWP DOMAIN-CONTAINING PROTEIN |
| AT1G80410
| PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
| AT1G59760
| PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0378
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT1G08410
| PredictedAffinity Capture-MS | FSW = 0.0523
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT3G56510
| PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.1103
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G02690
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0247
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT5G08420
| PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | RNA BINDING |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2348
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G69070
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0636
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT1G15440
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0341
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G61770
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1976
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT5G46840
| PredictedAffinity Capture-MS | FSW = 0.1429
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G06360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1573
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT4G15770
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1996
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G01560
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2164
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1404
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT2G18220
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2831
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT1G71280
| PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.0982
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3571
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G16280
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0187
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G08620
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0577
| Unknown | STRS2 (STRESS RESPONSE SUPPRESSOR 2) ATP-DEPENDENT HELICASE/ RNA BINDING |
| AT5G63630
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0810
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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