Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43340 - ( PHT6 carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugarhydrogen symporter )
27 Proteins interacs with AT5G43340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.1018
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G38940 | PredictedPhylogenetic profile method | FSW = 0.2963
| Unknown | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G28715 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1426
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT5G01820 | PredictedAffinity Capture-MS | FSW = 0.1324
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G29210 | PredictedAffinity Capture-Western | FSW = 0.2640
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT4G25910 | PredictedAffinity Capture-MS | FSW = 0.3546
| Unknown | NFU3 STRUCTURAL MOLECULE |
AT1G55690 | PredictedReconstituted ComplexCo-purificationAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.2250
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G43360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4378
| Unknown | PHT3 (PHOSPHATE TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43350 | PredictedPhylogenetic profile method | FSW = 0.3951
| Unknown | PHT11 (PHOSPHATE TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedPhylogenetic profile method | FSW = 0.0912
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G54700 | PredictedPhylogenetic profile method | FSW = 0.0683
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G03540 | Predictedinterologs mapping | FSW = 0.1176
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT3G21540 | PredictedAffinity Capture-MSAffinity Capture-Westerninterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternReconstituted Complexinterologs mappingCo-purificationAffinity Capture-MS | FSW = 0.3022
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G18600 | PredictedAffinity Capture-Westerninterologs mappinginterologs mappingReconstituted Complex | FSW = 0.1655
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G01020 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted ComplexReconstituted Complexinterologs mapping | FSW = 0.1253
| Unknown | ARV1 |
AT1G20696 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1070
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G49520 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-Western | FSW = 0.0962
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G55255 | PredictedAffinity Capture-Western | FSW = 0.0113
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G03080 | PredictedAffinity Capture-Western | FSW = 0.1990
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G44190 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.2735
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G45630 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1183
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G26510 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1300
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G07950 | PredictedAffinity Capture-Western | FSW = 0.3759
| Unknown | UNKNOWN PROTEIN |
AT5G49930 | PredictedAffinity Capture-Western | FSW = 0.2845
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT2G32830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2963
| Unknown | PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G20860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2634
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
AT1G76430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3206
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454