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AT3G28715 - ( H+-transporting two-sector ATPase putative )

75 Proteins interacs with AT3G28715

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G25520	Predicted two hybrid	FSW = 0.0151	Class C: vacuole plasma membrane	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76030	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0648	Class C: vacuole plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT1G78900	Predicted Affinity Capture-Western	FSW = 0.0637	Class C: vacuole plasma membrane	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G28710	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method	FSW = 0.3116	Class C: vacuole plasma membrane	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT4G02620	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0952	Class C: vacuole plasma membrane	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT2G21410	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.0738	Class C: vacuole	VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT5G46860	Predicted interaction prediction	FSW = 0.0049	Class C: vacuole	VAM3 SNAP RECEPTOR
AT5G10450	Predicted two hybrid	FSW = 0.0041	Class C: plasma membrane	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G60820	Predicted two hybrid	FSW = 0.0143	Class C: plasma membrane	PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G39740	Predicted two hybrid	FSW = 0.0122	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT1G59820	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0274	Class C: plasma membrane	ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT2G24765	Predicted two hybrid	FSW = 0.0082	Class C: plasma membrane	ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING
AT5G03690	Predicted two hybrid	FSW = 0.0253	Class C: plasma membrane	FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE
AT1G55690	Predicted Reconstituted Complex Affinity Capture-Western Co-purification Affinity Capture-Western Reconstituted Complex	FSW = 0.1023	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT2G19830	Predicted interaction prediction	FSW = 0.0198	Class C: plasma membrane	SNF72
AT1G04750	Predicted synthetic growth defect	FSW = 0.0586	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G14350	Predicted interaction prediction	FSW = 0.0114	Class C: plasma membrane	PROTEIN KINASE FAMILY PROTEIN
AT4G29210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Co-purification	FSW = 0.2976	Unknown	GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
AT1G74710	Predicted synthetic growth defect	FSW = 0.0581	Unknown	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT3G20550	Predicted Synthetic Lethality	FSW = 0.0359	Unknown	DDL (DAWDLE)
AT2G44350	Predicted interaction prediction	FSW = 0.0209	Unknown	ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT4G26530	Predicted two hybrid	FSW = 0.0444	Unknown	FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE
AT1G15710	Predicted interaction prediction	FSW = 0.0506	Unknown	PREPHENATE DEHYDROGENASE FAMILY PROTEIN
AT3G11630	Predicted synthetic growth defect	FSW = 0.0095	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G14170	Predicted two hybrid	FSW = 0.0070	Unknown	CHC1
AT3G21540	Predicted Co-purification	FSW = 0.0442	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G34390	Predicted two hybrid	FSW = 0.0066	Unknown	XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT3G18600	Predicted Affinity Capture-Western	FSW = 0.0288	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G71270	Predicted interaction prediction	FSW = 0.0190	Unknown	POK (POKY POLLEN TUBE)
AT3G05710	Predicted Co-purification	FSW = 0.0209	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT5G48840	Predicted interaction prediction	FSW = 0.0272	Unknown	PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) PANTOATE-BETA-ALANINE LIGASE/ PROTEIN HOMODIMERIZATION
AT1G79750	Predicted interaction prediction	FSW = 0.0119	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT2G42120	Predicted interaction prediction	FSW = 0.0237	Unknown	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT4G22570	Predicted interaction prediction	FSW = 0.0131	Unknown	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT2G16950	Predicted two hybrid	FSW = 0.0177	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G26210	Predicted two hybrid	FSW = 0.0082	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT1G20696	Predicted Affinity Capture-MS Co-purification Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS	FSW = 0.0824	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G03080	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.3030	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G08560	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0952	Unknown	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G13330	Predicted Colocalization Affinity Capture-Western	FSW = 0.0719	Unknown	BINDING
AT1G08780	Predicted Synthetic Lethality interaction prediction	FSW = 0.0126	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G20693	Predicted synthetic growth defect	FSW = 0.0608	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155	Predicted synthetic growth defect	FSW = 0.0544	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G35350	Predicted synthetic growth defect	FSW = 0.0785	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G49490	Predicted Affinity Capture-MS	FSW = 0.0082	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G78770	Predicted synthetic growth defect	FSW = 0.0512	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT2G37550	Predicted Synthetic Lethality	FSW = 0.0133	Unknown	AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G18430	Predicted Synthetic Lethality interaction prediction	FSW = 0.0437	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G18660	Predicted synthetic growth defect	FSW = 0.0479	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290	Predicted synthetic growth defect	FSW = 0.0641	Unknown	UNKNOWN PROTEIN
AT3G22480	Predicted Synthetic Lethality interaction prediction	FSW = 0.0154	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G24010	Predicted Synthetic Lethality	FSW = 0.0478	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030	Predicted Synthetic Lethality	FSW = 0.0525	Unknown	SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G00800	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0612	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G23895	Predicted two hybrid	FSW = 0.0802	Unknown	PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED
AT4G33080	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	PROTEIN KINASE PUTATIVE
AT5G07950	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.2182	Unknown	UNKNOWN PROTEIN
AT5G23290	Predicted Synthetic Lethality interaction prediction	FSW = 0.0167	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G43340	Predicted Affinity Capture-Western Co-purification	FSW = 0.1426	Unknown	PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G45620	Predicted synthetic growth defect	FSW = 0.0566	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G49930	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western interologs mapping Co-purification	FSW = 0.2588	Unknown	EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G45630	Predicted Co-purification	FSW = 0.0417	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G38900	Predicted interaction prediction	FSW = 0.0278	Unknown	BZIP PROTEIN
AT5G58240	Predicted interaction prediction	FSW = 0.0265	Unknown	BIS(5-ADENOSYL)-TRIPHOSPHATASE PUTATIVE
AT5G10050	Predicted interaction prediction	FSW = 0.0444	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G19110	Predicted interaction prediction	FSW = 0.0228	Unknown	PROTEIN KINASE PUTATIVE
AT4G40042	Predicted interaction prediction	FSW = 0.0108	Unknown	PEPTIDASE
AT5G51970	Predicted interaction prediction	FSW = 0.0289	Unknown	SORBITOL DEHYDROGENASE PUTATIVE / L-IDITOL 2-DEHYDROGENASE PUTATIVE
AT5G26680	Predicted interaction prediction	FSW = 0.0073	Unknown	ENDONUCLEASE PUTATIVE
AT5G01320	Predicted interaction prediction	FSW = 0.0286	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT4G05440	Predicted interaction prediction	FSW = 0.0282	Unknown	EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35)
AT4G16700	Predicted interaction prediction	FSW = 0.0333	Unknown	PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE
AT4G08960	Predicted interaction prediction	FSW = 0.0163	Unknown	PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT3G19020	Predicted interaction prediction	FSW = 0.0128	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G54650	Predicted interaction prediction	FSW = 0.0456	Unknown	METHYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G28715 - ( H+-transporting two-sector ATPase putative )

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Downloads

Fasta sequences: