Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05710 - ( SYP43 (SYNTAXIN OF PLANTS 43) SNAP receptor )
77 Proteins interacs with AT3G05710Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02130![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0699
| Class C:endoplasmic reticulum | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT5G39510![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-Western | FSW = 0.0876
| Class C:endoplasmic reticulum | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT1G14010![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0074
| Class C:endoplasmic reticulum | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G07100![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0268
| Class C:endoplasmic reticulum | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT5G17770![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0309
| Class C:endoplasmic reticulum | ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE |
AT5G23630![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1600
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G51460![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0532
| Class C:endoplasmic reticulum | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G07670![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1407
| Class C:endoplasmic reticulum | CALCIUM-TRANSPORTING ATPASE |
AT1G28490![]() ![]() ![]() ![]() | Predictedtwo hybridPhenotypic EnhancementCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2567
| Class C:endoplasmic reticulum | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G10130![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1028
| Class C:endoplasmic reticulum | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G01020![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0744
| Class C:endoplasmic reticulum | ARV1 |
AT5G66020![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0980
| Class C:endoplasmic reticulum | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G33120![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0363
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G76030![]() ![]() ![]() ![]() | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0274
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT1G20260![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G56190![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.0604
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT2G44610![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.1473
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G28715![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0209
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G16920![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0697
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT1G31780![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2887
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic EnhancementCo-purificationEnriched domain pairCo-expression | FSW = 0.3385
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT1G55190![]() ![]() ![]() ![]() | PredictedCo-purificationPhenotypic Enhancement | FSW = 0.1641
| Unknown | PRA7 |
AT3G22845![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0317
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT3G29100![]() ![]() ![]() ![]() | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.1153
| Unknown | VTI13 SNARE BINDING / RECEPTOR |
AT5G58060![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.1066
| Unknown | YKT61 |
AT3G19980![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0143
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07420![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0914
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G19490![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.1003
| Unknown | PROTEIN BINDING |
AT4G35800![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0052
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G59820![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1622
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT4G34580![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0967
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT1G13210![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1238
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G04750![]() ![]() ![]() ![]() | Predictedsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.0264
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G09900![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0214
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G75990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G26670![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0854
| Unknown | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G56330![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0300
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT4G18430![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0601
| Unknown | ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING |
AT2G22290![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1709
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G50500![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0816
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
AT1G04260![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1420
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT5G18280![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2270
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT1G09330![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0167
| Unknown | UNKNOWN PROTEIN |
AT4G39220![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1641
| Unknown | ATRER1A |
AT1G77140![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybridPhenotypic EnhancementAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted Complexinterologs mappingEnriched domain pairCo-expression | FSW = 0.1088
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT1G01910![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1764
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G12470![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0274
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT1G20575![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic EnhancementCo-purification | FSW = 0.1422
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G57600![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2790
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G79990![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1324
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G80500![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1753
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G02370![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0780
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G124501) HAS 1745 BLAST HITS TO 1745 PROTEINS IN 446 SPECIES ARCHAE - 2 BACTERIA - 792 METAZOA - 108 FUNGI - 97 PLANTS - 119 VIRUSES - 0 OTHER EUKARYOTES - 627 (SOURCE NCBI BLINK) |
AT2G22530![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1512
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G34770![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic EnhancementCo-expression | FSW = 0.1922
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G05000![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2223
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT1G16560![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2551
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G26450![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2455
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G26690![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0190
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G48760![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2592
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G37550![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1217
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G12180![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.2809
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G13235![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0634
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT3G50860![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1639
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G26550![]() ![]() ![]() ![]() | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2185
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
AT5G10260![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.1051
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G27970 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.1686
| Unknown | BINDING |
AT5G52210![]() ![]() ![]() ![]() | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1882
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G49950![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0125
| Unknown | EMBRYOGENESIS-ASSOCIATED PROTEIN-RELATED |
AT5G58030![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0449
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT1G50370![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0256
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT3G44340![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0553
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G12340![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1898
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT3G04080![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1857
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT1G09460![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.2120
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G52360![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1210
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT2G18240![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1511
| Unknown | RER1 PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454