Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G12470 - ( Pep3/Vps18/deep orange family protein )
38 Proteins interacs with AT1G12470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G19640 | PredictedPhenotypic Enhancement | FSW = 0.0734
| Unknown | ARA7 GTP BINDING |
AT5G39510 | PredictedAffinity Capture-Western | FSW = 0.2616
| Unknown | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT5G16830 | PredictedAffinity Capture-MSin vivo | FSW = 0.1775
| Unknown | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.1287
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT5G46860 | PredictedPhenotypic Enhancement | FSW = 0.1378
| Unknown | VAM3 SNAP RECEPTOR |
AT1G22740 | PredictedAffinity Capture-Western | FSW = 0.1406
| Unknown | RABG3B GTP BINDING |
AT1G79590 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.2017
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT3G29100 | Predictedinteraction prediction | FSW = 0.1684
| Unknown | VTI13 SNARE BINDING / RECEPTOR |
AT2G38020 | Predictedin vivointerologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.5432
| Unknown | VCL1 (VACUOLELESS 1) |
AT2G39800 | PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHETASE |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0512
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G16100 | PredictedAffinity Capture-Western | FSW = 0.1775
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.1208
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G05710 | PredictedCo-purification | FSW = 0.0274
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT2G05170 | Predictedtwo hybridin vivoAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2868
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G77140 | PredictedPhenotypic Enhancement | FSW = 0.3385
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT3G54860 | Predictedin vivoAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationin vivoAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.5317
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT2G07340 | Predictedtwo hybridtwo hybrid | FSW = 0.0245
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G11300 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G07430 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G08190 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2268
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0258
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.0877
| Unknown | SGA2 |
AT1G67190 | PredictedSynthetic Lethality | FSW = 0.1086
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0653
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.1004
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G28390 | Predictedtwo hybridinteraction prediction | FSW = 0.1433
| Unknown | SAND FAMILY PROTEIN |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0682
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0970
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1466
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0444
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT1G01960 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0121
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G43900 | PredictedAffinity Capture-MS | FSW = 0.0874
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.1298
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0855
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G24940 | Predictedinteraction prediction | FSW = 0.0260
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454