Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G67190 - ( F-box family protein )

91 Proteins interacs with AT1G67190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G43530

Predicted

synthetic growth defect

FSW = 0.2896

Unknown

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G11630

Predicted

synthetic growth defect

FSW = 0.1419

Unknown

 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT2G28190

Predicted

synthetic growth defect

FSW = 0.3106

Unknown

 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT4G01690

Predicted

Synthetic Lethality

FSW = 0.2051

Unknown

 PPOX PROTOPORPHYRINOGEN OXIDASE
AT3G06530

Predicted

Affinity Capture-MS

FSW = 0.0434

Unknown

 BINDING
AT1G12520

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.3168

Unknown

 ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G22060

Predicted

Synthetic Lethality

FSW = 0.0264

Unknown

 ATJ2 PROTEIN BINDING
AT1G07670

Predicted

synthetic growth defect

FSW = 0.0758

Unknown

 CALCIUM-TRANSPORTING ATPASE
AT5G63880

Predicted

synthetic growth defect

FSW = 0.1400

Unknown

 VPS201
AT2G44680

Predicted

Synthetic Lethality

FSW = 0.0854

Unknown

 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G26720

Predicted

synthetic growth defect

FSW = 0.1530

Unknown

 PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G67270

Predicted

synthetic growth defect

FSW = 0.2625

Unknown

 ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1389

Unknown

 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.0452

Unknown

 60S RIBOSOMAL PROTEIN-RELATED
AT1G44900

Predicted

Affinity Capture-MS

FSW = 0.0374

Unknown

 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT3G44530

Predicted

synthetic growth defect

FSW = 0.1102

Unknown

 HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G37720

Predicted

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0624

Unknown

 RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

 EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G19210

Predicted

synthetic growth defect

FSW = 0.2541

Unknown

 ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G25340

Predicted

Affinity Capture-MS

FSW = 0.0125

Unknown

 IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G44950

Predicted

synthetic growth defect

FSW = 0.2547

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G59900

Predicted

Synthetic Lethality

FSW = 0.0624

Unknown

 AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G31200

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT2G05170

Predicted

Synthetic Lethality

FSW = 0.0672

Unknown

 ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT2G44660

Predicted

Synthetic Lethality

FSW = 0.0111

Unknown

 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT2G31970

Predicted

Synthetic Lethality

FSW = 0.2358

Unknown

 RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

synthetic growth defect

FSW = 0.2587

Unknown

 XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1891

Unknown

 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT3G25980

Predicted

Synthetic Lethality

FSW = 0.0659

Unknown

 MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G20570

Predicted

Reconstituted Complex

FSW = 0.0113

Unknown

 RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

 UNKNOWN PROTEIN
AT5G40820

Predicted

Synthetic Lethality

FSW = 0.1148

Unknown

 ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT2G42120

Predicted

Affinity Capture-Western

FSW = 0.0795

Unknown

 POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT5G54260

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2718

Unknown

 MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20850

Predicted

synthetic growth defect

FSW = 0.1738

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G04020

Predicted

synthetic growth defect

FSW = 0.3830

Unknown

 BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730Predicted

synthetic growth defect

FSW = 0.3096

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G06720

Predicted

Affinity Capture-MS

FSW = 0.0367

Unknown

 INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G10930

Predicted

Synthetic Lethality

synthetic growth defect

synthetic growth defect

FSW = 0.2138

Unknown

 RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G12470

Predicted

Synthetic Lethality

FSW = 0.1086

Unknown

 PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G34150

Predicted

Synthetic Lethality

FSW = 0.1038

Unknown

 TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710

Predicted

Synthetic Lethality

FSW = 0.1231

Unknown

 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1686

Unknown

 HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54370

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0733

Unknown

 NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.1374

Unknown

 VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G66740

Predicted

synthetic growth defect

FSW = 0.2775

Unknown

 SGA2
AT1G80410

Predicted

synthetic growth defect

FSW = 0.1796

Unknown

 EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.2633

Unknown

 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44580

Predicted

synthetic growth defect

FSW = 0.3140

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT2G45000

Predicted

Phenotypic Suppression

FSW = 0.0264

Unknown

 EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT3G02820

Predicted

synthetic growth defect

FSW = 0.2459

Unknown

 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1468

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G25120Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2485

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2442

Unknown

 MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G38630

Predicted

synthetic growth defect

FSW = 0.1336

Unknown

 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740

Predicted

synthetic growth defect

FSW = 0.2788

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.2330

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680

Predicted

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

FSW = 0.3555

Unknown

 ENDONUCLEASE PUTATIVE
AT5G42190

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0205

Unknown

 ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G53770

Predicted

synthetic growth defect

FSW = 0.1643

Unknown

 NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT2G03820

Predicted

Affinity Capture-MS

FSW = 0.0038

Unknown

 NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT2G07690

Predicted

Affinity Capture-MS

FSW = 0.0219

Unknown

 MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G23070

Predicted

synthetic growth defect

FSW = 0.0332

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G27970

Predicted

Affinity Capture-MS

FSW = 0.0619

Unknown

 CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.0422

Unknown

 BINDING
AT3G24080

Predicted

Affinity Capture-MS

FSW = 0.0319

Unknown

 KRR1 FAMILY PROTEIN
AT3G42660

Predicted

Affinity Capture-MS

Synthetic Rescue

FSW = 0.3726

Unknown

 NUCLEOTIDE BINDING
AT4G08960

Predicted

synthetic growth defect

FSW = 0.0474

Unknown

 PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT4G10320

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

 ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE
AT4G11920

Predicted

Synthetic Lethality

FSW = 0.1735

Unknown

 CCS52A2 SIGNAL TRANSDUCER
AT4G15770

Predicted

Affinity Capture-MS

FSW = 0.0233

Unknown

 RNA BINDING / PROTEIN BINDING
AT4G19003

Predicted

synthetic growth defect

FSW = 0.1618

Unknown

 VPS25
AT4G25730

Predicted

Affinity Capture-MS

FSW = 0.0251

Unknown

 FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G27040

Predicted

synthetic growth defect

FSW = 0.1463

Unknown

 VPS22
AT4G27180

Predicted

synthetic growth defect

FSW = 0.1606

Unknown

 ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G33240

Predicted

synthetic growth defect

FSW = 0.1354

Unknown

 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G09680

Predicted

Synthetic Lethality

FSW = 0.0378

Unknown

 CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN
AT5G10260

Predicted

synthetic growth defect

FSW = 0.0988

Unknown

 ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270

Predicted

synthetic growth defect

FSW = 0.1733

Unknown

 CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.2502

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G35980

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT5G40530

Predicted

synthetic growth defect

FSW = 0.0061

Unknown

 EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK)
AT5G43500

Predicted

synthetic growth defect

FSW = 0.2579

Unknown

 ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

Synthetic Lethality

FSW = 0.2520

Unknown

 GAS41 PROTEIN BINDING
AT5G46280

Predicted

Affinity Capture-MS

FSW = 0.0258

Unknown

 DNA REPLICATION LICENSING FACTOR PUTATIVE
AT5G46840

Predicted

Affinity Capture-MS

FSW = 0.0241

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G48640

Predicted

Synthetic Lethality

FSW = 0.1414

Unknown

 CYCLIN FAMILY PROTEIN
AT5G61770

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

 PPAN (PETER PAN-LIKE PROTEIN)
AT5G63920

Predicted

synthetic growth defect

FSW = 0.1782

Unknown

 DNA TOPOISOMERASE III ALPHA PUTATIVE
AT4G26340

Predicted

Gene fusion method

FSW = 0.0426

Unknown

 F-BOX FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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