Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G08960 - ( phosphotyrosyl phosphatase activator (PTPA) family protein )
24 Proteins interacs with AT4G08960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G28715 | Predictedinteraction prediction | FSW = 0.0163
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G19980 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0290
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.1063
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G12520 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0729
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G52640 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0031
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.0749
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G47930 | Predictedtwo hybridtwo hybrid | FSW = 0.0368
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27D) |
AT1G13320 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.0388
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G42500 | PredictedReconstituted Complexinterologs mappingAffinity Capture-Western | FSW = 0.1361
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | Predictedinterologs mappingReconstituted Complex | FSW = 0.1141
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.0641
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1093
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G19120 | Predictedtwo hybridinteraction prediction | FSW = 0.0558
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G48870 | Predictedtwo hybridinteraction prediction | FSW = 0.0243
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0516
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G36200 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1724
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0337
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.0474
| Unknown | F-BOX FAMILY PROTEIN |
AT3G26020 | PredictedAffinity Capture-Western | FSW = 0.1361
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.1342
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G53000 | PredictedAffinity Capture-Western | FSW = 0.2984
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G50370 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0693
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G54670 | Predictedinteraction predictionCo-expression | FSW = 0.1106
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454