Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67270 - ( ATEB1C (microtubule end binding protein 1) microtubule binding )
111 Proteins interacs with AT5G67270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | Predictedtwo hybridSynthetic Lethalityinterologs mappinginteraction prediction | FSW = 0.0434
| Class C:nucleuscytoskeleton | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20960 | PredictedSynthetic Lethality | FSW = 0.0248
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G05560 | PredictedAffinity Capture-MS | FSW = 0.0070
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.0086
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT2G45490 | Predictedtwo hybrid | FSW = 0.0226
| Class C:nucleus | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G26720 | PredictedPhenotypic Enhancement | FSW = 0.1295
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G17790 | PredictedSynthetic Lethality | FSW = 0.0546
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT2G38810 | Predictedinteraction predictionCo-expression | FSW = 0.1518
| Class C:nucleus | HTA8 (HISTONE H2A 8) DNA BINDING |
AT3G12810 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2945
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G43810 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1663
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT5G64630 | PredictedPhenotypic Suppression | FSW = 0.1026
| Class C:nucleus | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G19120 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1919
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.2086
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G13940 | Predictedsynthetic growth defect | FSW = 0.0964
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G25940 | Predictedsynthetic growth defect | FSW = 0.0317
| Class C:nucleus | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
AT1G02740 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1707
| Class C:nucleus | CHROMATIN BINDING |
AT2G35670 | PredictedSynthetic Lethality | FSW = 0.2054
| Class C:nucleus | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT1G07370 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2616
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G72560 | Predictedsynthetic growth defect | FSW = 0.0075
| Class C:nucleus | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G13370 | Predictedsynthetic growth defect | FSW = 0.1061
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.2563
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G37990 | PredictedAffinity Capture-MS | FSW = 0.0106
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT3G19210 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1763
| Class C:nucleus | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G65470 | PredictedPhenotypic Suppression | FSW = 0.1432
| Class C:nucleus | FAS1 (FASCIATA 1) HISTONE BINDING |
AT3G60840 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.2000
| Class C:cytoskeleton | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT3G61650 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1010
| Class C:cytoskeleton | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G62500 | Predictedtwo hybrid | FSW = 0.0342
| Class C:cytoskeleton | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT3G47690 | PredictedPhylogenetic profile method | FSW = 0.5814
| Class C:cytoskeleton | ATEB1A MICROTUBULE BINDING |
AT2G35630 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0633
| Class C:cytoskeleton | MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0081
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT2G21580 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25B) |
AT2G01690 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0547
| Unknown | BINDING |
AT3G02520 | Predictedsynthetic growth defectAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0968
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G17300 | Predictedsynthetic growth defect | FSW = 0.0261
| Unknown | NS1 ASPARAGINE-TRNA LIGASE |
AT3G25660 | PredictedSynthetic Lethality | FSW = 0.0570
| Unknown | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE PUTATIVE |
AT2G28190 | PredictedSynthetic Lethality | FSW = 0.2153
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G73820 | PredictedSynthetic Lethality | FSW = 0.0505
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT5G63110 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1566
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.2489
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G11890 | Predictedsynthetic growth defect | FSW = 0.1311
| Unknown | SEC22 TRANSPORTER |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT3G14270 | Predictedinteraction prediction | FSW = 0.0458
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT2G31970 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.1873
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1862
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G25980 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.1457
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G54260 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2058
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0504
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT2G36200 | Predictedinteraction prediction | FSW = 0.2485
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G20850 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1306
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G04730 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.3880
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G05910 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1742
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G08780 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.3182
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G13870 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0824
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G29990 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3171
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G49540 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1521
| Unknown | NUCLEOTIDE BINDING |
AT1G52740 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2538
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1598
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G79890 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2139
| Unknown | HELICASE-RELATED |
AT1G80410 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1778
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G18290 | PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G27970 | PredictedSynthetic Lethality | FSW = 0.0830
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G33560 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0859
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G44270 | PredictedSynthetic Lethality | FSW = 0.0201
| Unknown | ATP BINDING |
AT2G44580 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3936
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.3123
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G06670 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0623
| Unknown | BINDING |
AT3G22480 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.2613
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G42660 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.4018
| Unknown | NUCLEOTIDE BINDING |
AT3G44010 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29B) |
AT3G47120 | Predictedsynthetic growth defect | FSW = 0.0350
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G49650 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1157
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G50960 | Predictedsynthetic growth defect | FSW = 0.0452
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT3G54380 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1836
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G58560 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1437
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G08960 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1093
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT4G15930 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.0474
| Unknown | MICROTUBULE MOTOR |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.3712
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G33240 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2172
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT4G39050 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1498
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G09680 | Predictedsynthetic growth defect | FSW = 0.0712
| Unknown | CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.1074
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10270 | PredictedSynthetic Lethality | FSW = 0.1160
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G10960 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1750
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13680 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0971
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G13780 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.2102
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G15070 | PredictedSynthetic Lethality | FSW = 0.0140
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G23290 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.2696
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.1278
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G43500 | Predictedsynthetic growth defect | FSW = 0.1962
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G45600 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3739
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.3148
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G50320 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1318
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G52580 | Predictedsynthetic growth defect | FSW = 0.0281
| Unknown | RAB GTPASE ACTIVATOR |
AT5G55130 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0595
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT5G60510 | PredictedSynthetic Lethality | FSW = 0.0117
| Unknown | UNDECAPRENYL PYROPHOSPHATE SYNTHETASE FAMILY PROTEIN / UPP SYNTHETASE FAMILY PROTEIN |
AT5G62030 | Predictedsynthetic growth defect | FSW = 0.0142
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT5G65180 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1837
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT1G23260 | PredictedPhenotypic Enhancement | FSW = 0.0570
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G51710 | PredictedPhenotypic Suppression | FSW = 0.1210
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G56450 | Predictedtwo hybridinteraction prediction | FSW = 0.0125
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0515
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.2625
| Unknown | F-BOX FAMILY PROTEIN |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.2460
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G26020 | PredictedPhenotypic Enhancement | FSW = 0.1895
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G38630 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1466
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.2625
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.2294
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0762
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454