Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67270 - ( ATEB1C (microtubule end binding protein 1) microtubule binding )

111 Proteins interacs with AT5G67270
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

two hybrid

Synthetic Lethality

interologs mapping

interaction prediction

FSW = 0.0434

Class C:

nucleus

cytoskeleton

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G20960

Predicted

Synthetic Lethality

FSW = 0.0248

Class C:

nucleus

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G05560

Predicted

Affinity Capture-MS

FSW = 0.0070

Class C:

nucleus

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.0086

Class C:

nucleus

60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT2G45490

Predicted

two hybrid

FSW = 0.0226

Class C:

nucleus

ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE
AT4G26720

Predicted

Phenotypic Enhancement

FSW = 0.1295

Class C:

nucleus

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G17790

Predicted

Synthetic Lethality

FSW = 0.0546

Class C:

nucleus

DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT2G38810

Predicted

interaction prediction

Co-expression

FSW = 0.1518

Class C:

nucleus

HTA8 (HISTONE H2A 8) DNA BINDING
AT3G12810

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2945

Class C:

nucleus

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G43810

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1663

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G64630

Predicted

Phenotypic Suppression

FSW = 0.1026

Class C:

nucleus

FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1919

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Phenotypic Enhancement

FSW = 0.2086

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G13940

Predicted

synthetic growth defect

FSW = 0.0964

Class C:

nucleus

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G25940

Predicted

synthetic growth defect

FSW = 0.0317

Class C:

nucleus

TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN
AT1G02740

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1707

Class C:

nucleus

CHROMATIN BINDING
AT2G35670

Predicted

Synthetic Lethality

FSW = 0.2054

Class C:

nucleus

FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT1G07370

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2616

Class C:

nucleus

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G72560

Predicted

synthetic growth defect

FSW = 0.0075

Class C:

nucleus

PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G13370

Predicted

synthetic growth defect

FSW = 0.1061

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.2563

Class C:

nucleus

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G37990

Predicted

Affinity Capture-MS

FSW = 0.0106

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT3G19210

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1763

Class C:

nucleus

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G65470

Predicted

Phenotypic Suppression

FSW = 0.1432

Class C:

nucleus

FAS1 (FASCIATA 1) HISTONE BINDING
AT3G60840

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.2000

Class C:

cytoskeleton

MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)
AT3G61650

Predicted

Synthetic Lethality

interologs mapping

FSW = 0.1010

Class C:

cytoskeleton

TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G62500

Predicted

two hybrid

FSW = 0.0342

Class C:

cytoskeleton

ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING
AT3G47690

Predicted

Phylogenetic profile method

FSW = 0.5814

Class C:

cytoskeleton

ATEB1A MICROTUBULE BINDING
AT2G35630

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

FSW = 0.0633

Class C:

cytoskeleton

MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G44610

Predicted

interaction prediction

FSW = 0.0081

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT2G21580

Predicted

Affinity Capture-MS

FSW = 0.0276

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25B)
AT2G01690

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0547

Unknown

BINDING
AT3G02520

Predicted

synthetic growth defect

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0968

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G17300

Predicted

synthetic growth defect

FSW = 0.0261

Unknown

NS1 ASPARAGINE-TRNA LIGASE
AT3G25660

Predicted

Synthetic Lethality

FSW = 0.0570

Unknown

GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE PUTATIVE
AT2G28190

Predicted

Synthetic Lethality

FSW = 0.2153

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT1G73820

Predicted

Synthetic Lethality

FSW = 0.0505

Unknown

SSU72-LIKE FAMILY PROTEIN
AT5G63110

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1566

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.2489

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G11890

Predicted

synthetic growth defect

FSW = 0.1311

Unknown

SEC22 TRANSPORTER
AT3G53430

Predicted

Affinity Capture-MS

FSW = 0.0162

Unknown

60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT3G14270

Predicted

interaction prediction

FSW = 0.0458

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT2G31970

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

interaction prediction

Co-expression

FSW = 0.1873

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

synthetic growth defect

FSW = 0.1862

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G25980

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.1457

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G21710

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G54260

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.2058

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G37560

Predicted

Synthetic Lethality

FSW = 0.0504

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT2G36200

Predicted

interaction prediction

FSW = 0.2485

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT5G20850

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1306

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G04730Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.3880

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G05910

Predicted

Synthetic Lethality

Synthetic Lethality

interaction prediction

FSW = 0.1742

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.3182

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G13870

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0824

Unknown

DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING
AT1G29990

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3171

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49540

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1521

Unknown

NUCLEOTIDE BINDING
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2538

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1598

Unknown

SNL5 (SIN3-LIKE 5)
AT1G79890

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2139

Unknown

HELICASE-RELATED
AT1G80410

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.1778

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G18290

Predicted

Synthetic Lethality

FSW = 0.0729

Unknown

ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G27970

Predicted

Synthetic Lethality

FSW = 0.0830

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G33560

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.0859

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G44270

Predicted

Synthetic Lethality

FSW = 0.0201

Unknown

ATP BINDING
AT2G44580

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3936

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G02820

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.3123

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G06670

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0623

Unknown

BINDING
AT3G22480

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Co-expression

FSW = 0.2613

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G42660

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.4018

Unknown

NUCLEOTIDE BINDING
AT3G44010Predicted

Affinity Capture-MS

FSW = 0.0136

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29B)
AT3G47120

Predicted

synthetic growth defect

FSW = 0.0350

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G49650

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1157

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G50960

Predicted

synthetic growth defect

FSW = 0.0452

Unknown

PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT3G54380

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1836

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G58560

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1437

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G08960

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1093

Unknown

PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT4G15930

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Co-expression

FSW = 0.0474

Unknown

MICROTUBULE MOTOR
AT4G27180

Predicted

Synthetic Lethality

FSW = 0.3712

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G33240

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2172

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G39050

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1498

Unknown

KINESIN-RELATED PROTEIN (MKRP2)
AT5G09680

Predicted

synthetic growth defect

FSW = 0.0712

Unknown

CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.1074

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.1160

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10960

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1750

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13680

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0971

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G13780

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.2102

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G15070

Predicted

Synthetic Lethality

FSW = 0.0140

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G23290

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.2696

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G27740

Predicted

Phenotypic Enhancement

FSW = 0.1278

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G43500

Predicted

synthetic growth defect

FSW = 0.1962

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3739

Unknown

GAS41 PROTEIN BINDING
AT5G49510

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.3148

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G50320

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.1318

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G52580

Predicted

synthetic growth defect

FSW = 0.0281

Unknown

RAB GTPASE ACTIVATOR
AT5G55130

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0595

Unknown

CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT5G60510

Predicted

Synthetic Lethality

FSW = 0.0117

Unknown

UNDECAPRENYL PYROPHOSPHATE SYNTHETASE FAMILY PROTEIN / UPP SYNTHETASE FAMILY PROTEIN
AT5G62030

Predicted

synthetic growth defect

FSW = 0.0142

Unknown

DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN
AT5G65180

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1837

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT1G23260

Predicted

Phenotypic Enhancement

FSW = 0.0570

Unknown

MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G51710

Predicted

Phenotypic Suppression

FSW = 0.1210

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54390

Predicted

Phenotypic Enhancement

FSW = 0.1013

Unknown

PHD FINGER PROTEIN-RELATED
AT1G56450

Predicted

two hybrid

interaction prediction

FSW = 0.0125

Unknown

PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0515

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G67190

Predicted

synthetic growth defect

FSW = 0.2625

Unknown

F-BOX FAMILY PROTEIN
AT2G02760

Predicted

synthetic growth defect

FSW = 0.2460

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.1895

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT4G38630

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1466

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740

Predicted

synthetic growth defect

FSW = 0.2625

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G26680

Predicted

synthetic growth defect

FSW = 0.2294

Unknown

ENDONUCLEASE PUTATIVE
AT5G53770

Predicted

synthetic growth defect

FSW = 0.0762

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454