Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47690 - ( ATEB1A microtubule binding )
83 Proteins interacs with AT3G47690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G62500 | ExperimentalReconstituted Complex | FSW = 0.0303
| Class A:cytoskeletonClass B:endoplasmic reticulumClass D:cytosol (p = 0.67) | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT1G35160 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0506
| Class C:cytoskeleton | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.3550
| Class C:cytoskeleton | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | PredictedPhylogenetic profile method | FSW = 0.5814
| Class C:cytoskeleton | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G14690 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2457
| Class C:cytoskeleton | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT2G35630 | Predictedtwo hybrid | FSW = 0.0640
| Class C:cytoskeleton | MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING |
AT1G04820 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0519
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G01690 | PredictedSynthetic Lethality | FSW = 0.0708
| Unknown | BINDING |
AT1G20960 | PredictedSynthetic Lethality | FSW = 0.0253
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G25660 | PredictedSynthetic Lethality | FSW = 0.0749
| Unknown | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE PUTATIVE |
AT1G73820 | PredictedSynthetic Lethality | FSW = 0.0422
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT1G11890 | Predictedsynthetic growth defect | FSW = 0.0841
| Unknown | SEC22 TRANSPORTER |
AT3G01310 | PredictedSynthetic Lethality | FSW = 0.0449
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT3G12810 | Predictedsynthetic growth defect | FSW = 0.2228
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G13940 | Predictedsynthetic growth defect | FSW = 0.0759
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G02740 | Predictedsynthetic growth defect | FSW = 0.1528
| Unknown | CHROMATIN BINDING |
AT3G25940 | Predictedsynthetic growth defect | FSW = 0.0280
| Unknown | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
AT4G38130 | PredictedSynthetic Lethality | FSW = 0.0769
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G37990 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT2G13370 | Predictedsynthetic growth defect | FSW = 0.0783
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G72560 | Predictedsynthetic growth defect | FSW = 0.0057
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT3G19210 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1487
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G06230 | PredictedSynthetic Lethality | FSW = 0.0633
| Unknown | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT1G07370 | PredictedSynthetic Lethality | FSW = 0.1806
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G43810 | PredictedSynthetic Lethality | FSW = 0.1309
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1566
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G67630 | PredictedSynthetic Lethality | FSW = 0.0269
| Unknown | POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0174
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT2G31970 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1455
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1524
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G54260 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1353
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G36200 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3256
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0759
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT3G25980 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1184
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G70980 | Predictedsynthetic growth defect | FSW = 0.0376
| Unknown | SYNC3 ATP BINDING / AMINOACYL-TRNA LIGASE/ ASPARAGINE-TRNA LIGASE/ ASPARTATE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G20850 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0965
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G08830 | PredictedSynthetic Lethality | FSW = 0.1394
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0683
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1792
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1951
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.1006
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT3G58560 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1325
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G49540 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1151
| Unknown | NUCLEOTIDE BINDING |
AT5G52590 | Predictedsynthetic growth defect | FSW = 0.0126
| Unknown | NUCLEOTIDE BINDING |
AT3G47120 | Predictedsynthetic growth defect | FSW = 0.0359
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G18990 | Predictedsynthetic growth defect | FSW = 0.0941
| Unknown | TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) |
AT1G15920 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.2245
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G26990 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1070
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT1G10450 | Predictedsynthetic growth defect | FSW = 0.1748
| Unknown | SNL6 (SIN3-LIKE 6) |
AT5G62030 | Predictedsynthetic growth defect | FSW = 0.0188
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT5G09680 | Predictedsynthetic growth defect | FSW = 0.0248
| Unknown | CYTOCHROME B5 DOMAIN-CONTAINING PROTEIN |
AT3G06670 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0400
| Unknown | BINDING |
AT1G80410 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1830
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.2165
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G49510 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2422
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2333
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G16270 | PredictedSynthetic Lethality | FSW = 0.1463
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT4G15930 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0519
| Unknown | MICROTUBULE MOTOR |
AT3G02820 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2762
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT2G44580 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.3226
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G08780 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2876
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2177
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G55130 | PredictedSynthetic Lethality | FSW = 0.0774
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT1G13870 | PredictedSynthetic Lethality | FSW = 0.0842
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G29990 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2250
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.0738
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT1G04730 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.3081
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G52740 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1995
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G79890 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2337
| Unknown | HELICASE-RELATED |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.1286
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT3G42660 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.3094
| Unknown | NUCLEOTIDE BINDING |
AT2G33560 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0995
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G71010 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1765
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G05910 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1363
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G76170 | PredictedSynthetic Lethality | FSW = 0.0310
| Unknown | ATP BINDING |
AT5G10270 | PredictedSynthetic Lethality | FSW = 0.1352
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT2G18290 | PredictedSynthetic Lethality | FSW = 0.0647
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT5G40490 | PredictedSynthetic Lethality | FSW = 0.1212
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G08960 | PredictedSynthetic Lethality | FSW = 0.0516
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT2G18000 | PredictedSynthetic Lethality | FSW = 0.2730
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT2G27960 | PredictedSynthetic Lethality | FSW = 0.0064
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G17570 | PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | UNDECAPRENYL PYROPHOSPHATE SYNTHETASE FAMILY PROTEIN / UPP SYNTHETASE FAMILY PROTEIN |
AT1G56450 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454