Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57450 - ( XRCC3 ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding )
72 Proteins interacs with AT5G57450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G45280 | Experimentalinteraction detection methodtwo hybrid | FSW = 0.0677
| Class D:plastid (p = 0.78)nucleus (p = 0.78) | ATRAD51C ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / RECOMBINASE/ SINGLE-STRANDED DNA BINDING |
AT5G20850 | Experimentalinteraction detection method | FSW = 0.3936
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT2G06510 | PredictedPhenotypic Enhancement | FSW = 0.1202
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT5G43530 | Predictedsynthetic growth defect | FSW = 0.2773
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G28190 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1869
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G11630 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1858
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G01690 | Predictedsynthetic growth defect | FSW = 0.3107
| Unknown | PPOX PROTOPORPHYRINOGEN OXIDASE |
AT3G27300 | Predictedtwo hybridtwo hybrid | FSW = 0.0296
| Unknown | G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT1G12520 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3266
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G11890 | Predictedinteraction predictiontwo hybrid | FSW = 0.0856
| Unknown | SEC22 TRANSPORTER |
AT5G19990 | Predictedtwo hybridtwo hybrid | FSW = 0.0208
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0672
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G67270 | Predictedsynthetic growth defect | FSW = 0.1862
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.1283
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G43810 | Predictedsynthetic growth defect | FSW = 0.1082
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0365
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G19120 | Predictedsynthetic growth defect | FSW = 0.1532
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | Predictedsynthetic growth defect | FSW = 0.1532
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.3042
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G26150 | Predictedsynthetic growth defect | FSW = 0.1236
| Unknown | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07370 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2801
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.2206
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.2056
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G35940 | Predictedsynthetic growth defect | FSW = 0.2494
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G47690 | Predictedsynthetic growth defect | FSW = 0.1524
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G66130 | Predictedtwo hybridPhenotypic Suppression | FSW = 0.2962
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G40760 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT1G07745 | Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0986
| Unknown | RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G19910 | Predictedsynthetic growth defect | FSW = 0.1284
| Unknown | SOH1 FAMILY PROTEIN |
AT5G63960 | PredictedSynthetic Lethality | FSW = 0.0655
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G07880 | PredictedPhenotypic Enhancement | FSW = 0.0153
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT5G40820 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.1380
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G22880 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G08830 | PredictedSynthetic Lethality | FSW = 0.2171
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT3G13170 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0416
| Unknown | ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC |
AT4G35740 | Predictedtwo hybrid | FSW = 0.0474
| Unknown | RECQL3 ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G02820 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0552
| Unknown | RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING |
AT5G20000 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.2777
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G04730 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.3926
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G60490 | Predictedsynthetic growth defect | FSW = 0.1557
| Unknown | ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G66740 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3415
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.2587
| Unknown | F-BOX FAMILY PROTEIN |
AT1G67500 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1228
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1736
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2031
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G02820 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.4211
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G12400 | Predictedsynthetic growth defect | FSW = 0.1442
| Unknown | ELC UBIQUITIN BINDING |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.4302
| Unknown | NUCLEOTIDE BINDING |
AT4G11920 | Predictedsynthetic growth defect | FSW = 0.1760
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G25120 | PredictedSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescuePhenotypic Enhancement | FSW = 0.3272
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.1344
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.3781
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.1668
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G27970 | Predictedsynthetic growth defect | FSW = 0.1544
| Unknown | BINDING |
AT5G44750 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0583
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
AT1G10930 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.2659
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0472
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.1173
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT2G44580 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.4036
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.1602
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.1536
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10790 | PredictedPhenotypic Enhancement | FSW = 0.0648
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.1124
| Unknown | POLA3 DNA PRIMASE |
AT5G49510 | PredictedPhenotypic Suppression | FSW = 0.0682
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G63920 | PredictedSynthetic Rescue | FSW = 0.2863
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.1319
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT5G40490 | Predictedsynthetic growth defect | FSW = 0.1209
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.1576
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.2335
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G14400 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1859
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT4G35450 | PredictedGene fusion method | FSW = 0.0128
| Unknown | AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454