Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07120 - ( zinc finger (C3HC4-type RING finger) family protein )
37 Proteins interacs with AT3G07120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | HISTONE H4 |
AT4G01690 | Predictedsynthetic growth defect | FSW = 0.1980
| Unknown | PPOX PROTOPORPHYRINOGEN OXIDASE |
AT1G64230 | Predictedsynthetic growth defectEnriched domain pair | FSW = 0.0537
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0538
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G19120 | Predictedsynthetic growth defect | FSW = 0.1420
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G54280 | PredictedSynthetic Rescue | FSW = 0.0305
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G02740 | Predictedsynthetic growth defect | FSW = 0.0415
| Unknown | CHROMATIN BINDING |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.2463
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G11100 | Predictedsynthetic growth defect | FSW = 0.0308
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / ZINC FINGER PROTEIN-RELATED |
AT1G14690 | PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT2G05170 | Predictedsynthetic growth defect | FSW = 0.0786
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1823
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G23890 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.2335
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.1919
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G77140 | Predictedsynthetic growth defect | FSW = 0.1184
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.1371
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G08830 | Predictedsynthetic growth defect | FSW = 0.2351
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | H2AXA DNA BINDING |
AT5G26680 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1966
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1974
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.2461
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1757
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.2420
| Unknown | NUCLEOTIDE BINDING |
AT1G60430 | Predictedsynthetic growth defect | FSW = 0.0664
| Unknown | ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.1867
| Unknown | SGA2 |
AT4G11920 | Predictedsynthetic growth defect | FSW = 0.2392
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT5G27970 | Predictedsynthetic growth defect | FSW = 0.1505
| Unknown | BINDING |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.2508
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G69380 | Predictedsynthetic growth defect | FSW = 0.0400
| Unknown | UNKNOWN PROTEIN |
AT2G18000 | Predictedsynthetic growth defect | FSW = 0.1623
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT3G02820 | Predictedsynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.1964
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.2009
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G04730 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.2593
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G10930 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2482
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G11660 | PredictedSynthetic Lethality | FSW = 0.0346
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT5G63920 | PredictedSynthetic Lethality | FSW = 0.2217
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454