AtPIN will be upgraded. Please send your suggestions here

AT5G20850 - ( ATRAD51 ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding )

196 Proteins interacs with AT5G20850

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G01820	Experimental	FSW = 0.0106	Class D: cytosol (p = 0.67)	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63310	Experimental	FSW = 0.0058	Class D: cytosol (p = 0.67)	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING
AT1G70310	Experimental	FSW = 0.0113	Class D: cytosol (p = 0.67)	SPDS2 (SPERMIDINE SYNTHASE 2) SPERMIDINE SYNTHASE
AT1G22280	Experimental	FSW = 0.0134	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G09530	Experimental	FSW = 0.0034	Unknown	PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT3G19210	Experimental two hybrid one hybrid two hybrid	FSW = 0.4024	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G01630	Experimental Affinity Capture-Western coimmunoprecipitation	FSW = 0.0273	Unknown	BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G29350	Experimental	FSW = 0.0100	Unknown	AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER
AT3G22880	Experimental Affinity Capture-Western coimmunoprecipitation	FSW = 0.0328	Class D: cytosol (p = 0.67)	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G57450	Experimental interaction detection method	FSW = 0.3936	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G25350	Experimental two hybrid	FSW = 0.0280	Unknown	EBF2 (EIN3-BINDING F BOX PROTEIN 2) PROTEIN BINDING
AT5G45010	Experimental	FSW = 0.0245	Unknown	ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)
AT3G21340	Experimental	FSW = 0.0101	Unknown	LEUCINE-RICH REPEAT PROTEIN KINASE PUTATIVE
AT3G49470	Experimental	FSW = 0.0215	Unknown	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT3G16130	Experimental	FSW = 0.0134	Unknown	ROPGEF13 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT2G44540	Experimental	FSW = 0.0042	Unknown	ATGH9B9 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B9) CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT1G02990	Experimental	FSW = 0.0201	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ZINC ION BINDING (TAIRAT3G629001) HAS 5071 BLAST HITS TO 3731 PROTEINS IN 313 SPECIES ARCHAE - 10 BACTERIA - 271 METAZOA - 2187 FUNGI - 266 PLANTS - 194 VIRUSES - 11 OTHER EUKARYOTES - 2132 (SOURCE NCBI BLINK)
AT1G64750	Experimental	FSW = 0.0364	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT4G29170	Experimental	FSW = 0.0655	Unknown	ATMND1
AT4G17380	Experimental confocal microscopy	FSW = 0.0163	Unknown	MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G09140	Experimental confocal microscopy	FSW = 0.0829	Unknown	MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT4G00020	Experimental two hybrid Affinity Capture-Western two hybrid coimmunoprecipitation	FSW = 0.0368	Unknown	PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
YGL163C	Experimental two hybrid	FSW = 0.0052	Unknown	PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
ETG5888	Experimental two hybrid	FSW = 0.0300	Unknown	PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
RP1-199H16.	Experimental two hybrid	FSW = 0.0201	Unknown	PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT4G01100	Predicted two hybrid	FSW = 0.0021	Unknown	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT2G33210	Predicted Affinity Capture-MS	FSW = 0.0051	Unknown	HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G04120	Predicted Affinity Capture-MS	FSW = 0.0372	Unknown	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G56070	Predicted Affinity Capture-MS	FSW = 0.0349	Unknown	LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G23990	Predicted Affinity Capture-MS	FSW = 0.0171	Unknown	HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT3G22110	Predicted Phenotypic Enhancement	FSW = 0.0267	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G06510	Predicted Phenotypic Enhancement Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Synthetic Rescue interaction prediction	FSW = 0.1145	Unknown	RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT1G76490	Predicted Affinity Capture-MS	FSW = 0.0034	Unknown	HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT3G52140	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0151	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G43530	Predicted synthetic growth defect Phenotypic Enhancement synthetic growth defect Phenotypic Enhancement	FSW = 0.1807	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G11870	Predicted Synthetic Lethality	FSW = 0.0129	Unknown	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT2G45300	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0478	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT3G48190	Predicted Affinity Capture-Western	FSW = 0.0507	Unknown	ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE
AT1G12520	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1803	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT2G33340	Predicted Synthetic Rescue	FSW = 0.0097	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G14970	Predicted in vivo	FSW = 0.0443	Unknown	UNKNOWN PROTEIN
AT2G28190	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1332	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630	Predicted Synthetic Lethality synthetic growth defect Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1342	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G10050	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0403	Unknown	OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT1G48860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0090	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT5G63110	Predicted Phenotypic Enhancement	FSW = 0.0632	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
ATCG00830	Predicted synthetic growth defect	FSW = 0.0160	Unknown	ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT5G56030	Predicted Affinity Capture-MS	FSW = 0.0215	Unknown	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT1G75950	Predicted two hybrid	FSW = 0.0058	Unknown	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G07670	Predicted synthetic growth defect	FSW = 0.0338	Unknown	CALCIUM-TRANSPORTING ATPASE
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0282	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G18524	Predicted Phenotypic Suppression	FSW = 0.1535	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G17270	Predicted Affinity Capture-MS	FSW = 0.0159	Unknown	MO25 FAMILY PROTEIN
AT3G17750	Predicted two hybrid	FSW = 0.0291	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G16970	Predicted Synthetic Rescue Synthetic Lethality	FSW = 0.0857	Unknown	KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT4G39850	Predicted two hybrid two hybrid	FSW = 0.0050	Unknown	PXA1 (PEROXISOMAL ABC TRANSPORTER 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G48050	Predicted Phenotypic Enhancement	FSW = 0.0273	Unknown	KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT5G57015	Predicted two hybrid interaction prediction	FSW = 0.0050	Unknown	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G26720	Predicted Synthetic Lethality	FSW = 0.1091	Unknown	PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G15240	Predicted interologs mapping	FSW = 0.0500	Unknown	UNC-50 FAMILY PROTEIN
AT1G03930	Predicted two hybrid	FSW = 0.0011	Unknown	ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G67270	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1306	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT1G13330	Predicted interologs mapping	FSW = 0.0546	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TAT BINDING PROTEIN 1-INTERACTING (INTERPROIPR010776) HAS 2425 BLAST HITS TO 2142 PROTEINS IN 283 SPECIES ARCHAE - 50 BACTERIA - 240 METAZOA - 929 FUNGI - 179 PLANTS - 47 VIRUSES - 23 OTHER EUKARYOTES - 957 (SOURCE NCBI BLINK)
AT2G43810	Predicted synthetic growth defect	FSW = 0.0886	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G64630	Predicted Phenotypic Enhancement	FSW = 0.0825	Unknown	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120	Predicted synthetic growth defect	FSW = 0.1272	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted Synthetic Lethality	FSW = 0.1125	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G22750	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2323	Unknown	RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G26150	Predicted synthetic growth defect	FSW = 0.0864	Unknown	ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G04510	Predicted Synthetic Rescue	FSW = 0.0094	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G06720	Predicted interaction prediction	FSW = 0.0141	Unknown	IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT2G24490	Predicted Phenotypic Enhancement two hybrid	FSW = 0.0954	Unknown	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT3G02920	Predicted two hybrid	FSW = 0.0203	Unknown	REPLICATION PROTEIN-RELATED
AT1G51060	Predicted Phenotypic Enhancement	FSW = 0.0187	Unknown	HTA10 DNA BINDING
AT5G45400	Predicted in vitro in vivo	FSW = 0.0296	Unknown	REPLICATION PROTEIN PUTATIVE
AT5G61000	Predicted in vitro in vivo	FSW = 0.0291	Unknown	REPLICATION PROTEIN PUTATIVE
AT1G07370	Predicted Phenotypic Enhancement	FSW = 0.2287	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1802	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT2G38560	Predicted Phenotypic Enhancement	FSW = 0.0802	Unknown	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G44950	Predicted synthetic growth defect	FSW = 0.1591	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G48030	Predicted in vivo in vitro	FSW = 0.0053	Unknown	GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G35940	Predicted synthetic growth defect	FSW = 0.1722	Unknown	GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G61570	Predicted Affinity Capture-MS	FSW = 0.0318	Unknown	TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT5G26710	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0286	Unknown	GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE
AT1G10130	Predicted synthetic growth defect	FSW = 0.0313	Unknown	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G08730	Predicted two hybrid	FSW = 0.0017	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G47690	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0965	Unknown	ATEB1A MICROTUBULE BINDING
AT2G31970	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.4144	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G45280	Predicted Colocalization Phylogenetic profile method Co-expression	FSW = 0.0476	Unknown	ATRAD51C ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / RECOMBINASE/ SINGLE-STRANDED DNA BINDING
AT5G40820	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2092	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT1G07745	Predicted Colocalization	FSW = 0.0780	Unknown	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT2G28560	Predicted Colocalization	FSW = 0.0354	Unknown	RAD51B RECOMBINASE
AT5G58290	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Gene neighbors method Co-expression	FSW = 0.0274	Unknown	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G38470	Predicted Affinity Capture-MS	FSW = 0.0602	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G08830	Predicted Synthetic Lethality	FSW = 0.1194	Unknown	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT5G41150	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1327	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT5G66130	Predicted interologs mapping interologs mapping Synthetic Lethality Phenotypic Suppression synthetic growth defect	FSW = 0.2434	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT1G16190	Predicted Affinity Capture-MS	FSW = 0.0284	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G64520	Predicted Colocalization	FSW = 0.0270	Unknown	XRCC2
AT4G21710	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0296	Unknown	NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G63960	Predicted Synthetic Lethality	FSW = 0.0826	Unknown	EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G28030	Predicted Phenotypic Suppression	FSW = 0.0808	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT3G48470	Predicted Phenotypic Enhancement	FSW = 0.0074	Unknown	EMB2423 (EMBRYO DEFECTIVE 2423)
AT4G20920	Predicted two hybrid	FSW = 0.0201	Unknown	DOUBLE-STRANDED RNA BINDING
AT1G26830	Predicted two hybrid two hybrid	FSW = 0.0051	Unknown	ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G27880	Predicted two hybrid two hybrid	FSW = 0.0054	Unknown	ATP-DEPENDENT DNA HELICASE PUTATIVE
AT1G53710	Predicted two hybrid two hybrid	FSW = 0.0103	Unknown	HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G67320	Predicted two hybrid two hybrid	FSW = 0.0524	Unknown	DNA PRIMASE LARGE SUBUNIT FAMILY
AT1G77720	Predicted two hybrid	FSW = 0.0169	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G79000	Predicted two hybrid two hybrid	FSW = 0.0080	Unknown	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT2G01120	Predicted two hybrid	FSW = 0.0118	Unknown	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G27960	Predicted two hybrid two hybrid	FSW = 0.0178	Unknown	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT2G27970	Predicted two hybrid Phenotypic Enhancement	FSW = 0.0500	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G12980	Predicted two hybrid	FSW = 0.0078	Unknown	HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G54180	Predicted two hybrid	FSW = 0.0227	Unknown	CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT4G24740	Predicted two hybrid	FSW = 0.0267	Unknown	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT4G32660	Predicted two hybrid	FSW = 0.0329	Unknown	AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G27620	Predicted two hybrid two hybrid	FSW = 0.0171	Unknown	CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G42190	Predicted two hybrid	FSW = 0.0121	Unknown	ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G47240	Predicted two hybrid two hybrid	FSW = 0.0192	Unknown	ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT5G47650	Predicted two hybrid	FSW = 0.0187	Unknown	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE
AT5G49110	Predicted two hybrid two hybrid	FSW = 0.0054	Unknown	UNKNOWN PROTEIN
AT1G10930	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect Synthetic Rescue Phenotypic Suppression Phenotypic Suppression Synthetic Rescue Phenotypic Suppression Phenotypic Enhancement Affinity Capture-Western two hybrid in vivo in vitro far western blotting Phenotypic Enhancement Phenotypic Suppression	FSW = 0.2562	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G71350	Predicted Affinity Capture-MS	FSW = 0.0138	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT3G05740	Predicted Affinity Capture-Western two hybrid in vivo in vitro far western blotting	FSW = 0.1340	Unknown	RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G57870	Predicted interaction prediction two hybrid two hybrid two hybrid in vivo Synthetic Lethality	FSW = 0.0546	Unknown	SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT5G18940	Predicted Affinity Capture-MS	FSW = 0.0265	Unknown	MO25 FAMILY PROTEIN
AT1G04020	Predicted synthetic growth defect synthetic growth defect Affinity Capture-MS Affinity Capture-Western Phenotypic Enhancement	FSW = 0.2985	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G80210	Predicted Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.0398	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN MALE GAMETOPHYTE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT3G068202) HAS 785 BLAST HITS TO 706 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 423 FUNGI - 147 PLANTS - 120 VIRUSES - 0 OTHER EUKARYOTES - 92 (SOURCE NCBI BLINK)
AT3G06820	Predicted Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.0257	Unknown	MOV34 FAMILY PROTEIN
AT4G27230	Predicted Colocalization	FSW = 0.0373	Unknown	HTA2 (HISTONE H2A) DNA BINDING
AT5G02560	Predicted Colocalization	FSW = 0.0069	Unknown	HTA12 DNA BINDING
AT5G42470	Predicted Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.0271	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BRAIN AND REPRODUCTIVE ORGAN-EXPRESSED (INTERPROIPR010358) HAS 125 BLAST HITS TO 120 PROTEINS IN 32 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 14 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK)
AT5G48700	Predicted two hybrid in vivo in vivo two hybrid	FSW = 0.0114	Unknown	UBIQUITIN-RELATED
AT1G04730	Predicted Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.2787	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G24290	Predicted Dosage Growth Defect interologs mapping	FSW = 0.1194	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29940	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0186	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G49520	Predicted two hybrid	FSW = 0.0057	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G60490	Predicted synthetic growth defect	FSW = 0.0929	Unknown	ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G64550	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0345	Unknown	ATGCN3 TRANSPORTER
AT1G66740	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2324	Unknown	SGA2
AT1G67190	Predicted synthetic growth defect	FSW = 0.1738	Unknown	F-BOX FAMILY PROTEIN
AT1G67500	Predicted synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1211	Unknown	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G80410	Predicted synthetic growth defect	FSW = 0.1182	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760	Predicted Phenotypic Enhancement synthetic growth defect Phenotypic Enhancement	FSW = 0.1890	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G04660	Predicted two hybrid interaction prediction	FSW = 0.0068	Unknown	APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G22480	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0113	Unknown	PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT2G25100	Predicted synthetic growth defect	FSW = 0.0390	Unknown	RIBONUCLEASE HII FAMILY PROTEIN
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0553	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G44580	Predicted Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.2671	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT2G45500	Predicted interaction prediction two hybrid	FSW = 0.0248	Unknown	ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G02820	Predicted synthetic growth defect	FSW = 0.2398	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G12400	Predicted synthetic growth defect	FSW = 0.1341	Unknown	ELC UBIQUITIN BINDING
AT3G24090	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0272	Unknown	GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G42660	Predicted Synthetic Lethality synthetic growth defect Synthetic Lethality interaction prediction	FSW = 0.3232	Unknown	NUCLEOTIDE BINDING
AT3G58560	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1465	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G11920	Predicted synthetic growth defect	FSW = 0.1051	Unknown	CCS52A2 SIGNAL TRANSDUCER
AT4G25120	Predicted two hybrid two hybrid Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Lethality synthetic growth defect Phenotypic Enhancement Affinity Capture-Western Affinity Capture-Western synthetic growth defect Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Phenotypic Enhancement Phenotypic Suppression	FSW = 0.2996	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G27640	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0063	Unknown	IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G29380	Predicted synthetic growth defect	FSW = 0.0506	Unknown	PROTEIN KINASE FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G30870	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1691	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G38630	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1301	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10270	Predicted Synthetic Lethality	FSW = 0.1115	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10960	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.1564	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.1461	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G08840	Predicted Synthetic Rescue Synthetic Lethality	FSW = 0.1371	Unknown	EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G63160	Predicted Phenotypic Enhancement	FSW = 0.0916	Unknown	REPLICATION FACTOR C 40 KDA PUTATIVE
AT2G45700	Predicted Phenotypic Enhancement	FSW = 0.0480	Unknown	STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN
AT3G06910	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0552	Unknown	ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G18520	Predicted Phenotypic Enhancement	FSW = 0.0369	Unknown	HDA15 HISTONE DEACETYLASE
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.1155	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142	Predicted Affinity Capture-MS	FSW = 0.0260	Unknown	STRUCTURAL CONSTITUENT OF CELL WALL
AT4G25540	Predicted Phenotypic Suppression	FSW = 0.0537	Unknown	MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT5G09740	Predicted synthetic growth defect	FSW = 0.0899	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G26680	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.3447	Unknown	ENDONUCLEASE PUTATIVE
AT5G41880	Predicted Phenotypic Enhancement	FSW = 0.0972	Unknown	POLA3 DNA PRIMASE
AT5G44750	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0308	Unknown	REV1 DNA-DIRECTED DNA POLYMERASE
AT5G59440	Predicted Phenotypic Enhancement	FSW = 0.0245	Unknown	ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT5G63920	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue	FSW = 0.1516	Unknown	DNA TOPOISOMERASE III ALPHA PUTATIVE
AT5G27740	Predicted Phenotypic Enhancement	FSW = 0.1241	Unknown	EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G27970	Predicted synthetic growth defect	FSW = 0.1133	Unknown	BINDING
AT3G05480	Predicted synthetic growth defect interologs mapping	FSW = 0.0384	Unknown	RAD9
AT4G19130	Predicted two hybrid	FSW = 0.0201	Unknown	DNA BINDING / NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G02820	Predicted Colocalization	FSW = 0.0437	Unknown	RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT5G67100	Predicted Phenotypic Suppression	FSW = 0.0999	Unknown	ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT3G21350	Predicted Affinity Capture-MS	FSW = 0.0059	Unknown	RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT3G26680	Predicted Phenotypic Enhancement	FSW = 0.0506	Unknown	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT1G55255	Predicted synthetic growth defect	FSW = 0.1089	Unknown	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT5G40490	Predicted synthetic growth defect	FSW = 0.0942	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G23420	Predicted synthetic growth defect	FSW = 0.1119	Unknown	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G14400	Predicted synthetic growth defect	FSW = 0.1819	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G44065	Predicted synthetic growth defect	FSW = 0.0321	Unknown	RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT3G07120	Predicted synthetic growth defect	FSW = 0.1371	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G15920	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.1540	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G02690	Predicted two hybrid	FSW = 0.0152	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT4G35450	Predicted Gene fusion method	FSW = 0.0049	Unknown	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G20850 - ( ATRAD51 ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding )

Class D:

Class D:

Class D:

Unknown

Unknown

Unknown

Unknown

Unknown

Class D:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown