Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22142 - ( structural constituent of cell wall )
39 Proteins interacs with AT3G22142Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G13710 | PredictedPhenotypic Suppression | FSW = 0.0278
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G16100 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT3G12110 | Predictedtwo hybridtwo hybridinterologs mappinginterologs mappingfar western blottingReconstituted Complex | FSW = 0.0892
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.1285
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1610
| Unknown | SEC22 TRANSPORTER |
AT3G12810 | PredictedPhenotypic Suppression | FSW = 0.2066
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G38560 | PredictedPhenotypic Suppression | FSW = 0.1352
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G18620 | PredictedPhenotypic Enhancement | FSW = 0.0390
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.1585
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G31300 | PredictedSynthetic Lethality | FSW = 0.2000
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT3G05210 | PredictedPhenotypic Enhancement | FSW = 0.0383
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT5G20850 | PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G04160 | PredictedPhenotypic Enhancement | FSW = 0.0564
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G29990 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1754
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G49490 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingPhenotypic EnhancementSynthetic LethalityPhenotypic SuppressionColocalizationAffinity Capture-Westerntwo hybrid | FSW = 0.1079
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.2055
| Unknown | NUCLEOTIDE BINDING |
AT2G18600 | PredictedPhenotypic Enhancement | FSW = 0.0582
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.1766
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2293
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0625
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.1687
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1069
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0640
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.1440
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G20800 | PredictedPhenotypic Enhancement | FSW = 0.1825
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G22480 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1362
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0804
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G09230 | PredictedPhenotypic Enhancement | FSW = 0.0803
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1255
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G23290 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1098
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1854
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.1143
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.0434
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT3G55080 | PredictedPhenotypic Enhancement | FSW = 0.0220
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.1143
| Unknown | PUX4 PROTEIN BINDING |
AT5G02310 | PredictedPhenotypic Enhancement | FSW = 0.2004
| Unknown | PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.1274
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0748
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454