Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22142 - ( structural constituent of cell wall )

39 Proteins interacs with AT3G22142
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78900

Predicted

Affinity Capture-MS

FSW = 0.0918

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G13710

Predicted

Phenotypic Suppression

FSW = 0.0278

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT3G16100

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G12110

Predicted

two hybrid

two hybrid

interologs mapping

interologs mapping

far western blotting

Reconstituted Complex

FSW = 0.0892

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G23630

Predicted

Phenotypic Enhancement

FSW = 0.1285

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1610

Unknown

SEC22 TRANSPORTER
AT3G12810

Predicted

Phenotypic Suppression

FSW = 0.2066

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560

Predicted

Phenotypic Suppression

FSW = 0.1352

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G18620

Predicted

Phenotypic Enhancement

FSW = 0.0390

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT2G44950

Predicted

synthetic growth defect

FSW = 0.1585

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G31300

Predicted

Synthetic Lethality

FSW = 0.2000

Unknown

ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING
AT3G05210

Predicted

Phenotypic Enhancement

FSW = 0.0383

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT5G20850

Predicted

Affinity Capture-MS

FSW = 0.0260

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G04160

Predicted

Phenotypic Enhancement

FSW = 0.0564

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G29990

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1754

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G49490

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Phenotypic Enhancement

Synthetic Lethality

Phenotypic Suppression

Colocalization

Affinity Capture-Western

two hybrid

FSW = 0.1079

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.2055

Unknown

NUCLEOTIDE BINDING
AT2G18600

Predicted

Phenotypic Enhancement

FSW = 0.0582

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1766

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G08780

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2293

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0625

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.1687

Unknown

SNL5 (SIN3-LIKE 5)
AT1G73570

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1069

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0640

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.1440

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G20800

Predicted

Phenotypic Enhancement

FSW = 0.1825

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G22480

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1362

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G27000

Predicted

Synthetic Lethality

FSW = 0.0804

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G09230

Predicted

Phenotypic Enhancement

FSW = 0.0803

Unknown

SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.1255

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G23290

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1098

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1854

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G50320

Predicted

Phenotypic Enhancement

FSW = 0.1143

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G53770

Predicted

Synthetic Lethality

FSW = 0.0434

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT3G55080

Predicted

Phenotypic Enhancement

FSW = 0.0220

Unknown

SET DOMAIN-CONTAINING PROTEIN
AT4G04210

Predicted

Phenotypic Enhancement

FSW = 0.1143

Unknown

PUX4 PROTEIN BINDING
AT5G02310

Predicted

Phenotypic Enhancement

FSW = 0.2004

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.1274

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G41700

Predicted

Phenotypic Enhancement

FSW = 0.0748

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454