Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G73570 - ( suppressor of lin-12-like protein-related / sel-1 protein-related )
31 Proteins interacs with AT1G73570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G55400 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0751
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT1G07510 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0181
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT5G20290 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0210
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT5G15700 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0595
| Unknown | DNA-DIRECTED RNA POLYMERASE (RPOT2) |
AT5G63110 | Predictedinterologs mapping | FSW = 0.0335
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0029
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT5G23630 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0732
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0557
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0323
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G08720 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0423
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT3G18130 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT3G22830 | PredictedAffinity Capture-MS | FSW = 0.0988
| Unknown | AT-HSFA6B DNA BINDING / TRANSCRIPTION FACTOR |
AT2G31300 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2026
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G22310 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0573
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT1G04160 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0679
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G17140 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0573
| Unknown | TROPOMYOSIN-RELATED |
AT1G26450 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0512
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G57600 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0403
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G60430 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0772
| Unknown | ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE |
AT1G10930 | Predictedsynthetic growth defect | FSW = 0.0159
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0047
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT2G13680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0194
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G37840 | Predictedbiochemical | FSW = 0.0135
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0520
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G27000 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0681
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G57950 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G22142 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1069
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT4G08500 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0698
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT4G33240 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1032
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454