Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G27000 - ( ARP2 (ACTIN RELATED PROTEIN 2) protein binding / structural constituent of cytoskeleton )
106 Proteins interacs with AT3G27000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G13180 | Experimental | FSW = 0.2259
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G46225 | Experimental | FSW = 0.0360
| Unknown | ABIL1 (ABI-1-LIKE 1) |
AT1G49240 | PredictedPhylogenetic profile method | FSW = 0.1894
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G33210 | PredictedSynthetic Lethality | FSW = 0.0018
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT3G18780 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2305
| Unknown | ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G23990 | PredictedSynthetic Lethality | FSW = 0.0084
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT4G01320 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0349
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G18070 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT5G55400 | PredictedSynthetic Lethality | FSW = 0.0571
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT2G33040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0602
| Unknown | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT5G09810 | PredictedPhylogenetic profile method | FSW = 0.2108
| Unknown | ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G06510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0135
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT3G19980 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0107
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G22330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0462
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT1G24807 | PredictedAffinity Capture-MS | FSW = 0.0446
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G56030 | PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT4G34460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0569
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G45000 | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT3G12110 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1642
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G37620 | PredictedPhylogenetic profile method | FSW = 0.2119
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G23630 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0314
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0238
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G03920 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G14350 | Predictedinteraction prediction | FSW = 0.0082
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G24510 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0335
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT3G27960 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | KINESIN LIGHT CHAIN-RELATED |
AT2G19760 | PredictedSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0206
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT2G42170 | PredictedPhylogenetic profile method | FSW = 0.2234
| Unknown | ACTIN PUTATIVE |
AT3G53750 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2049
| Unknown | ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G10330 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT3G21700 | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | SGP2 GTP BINDING |
AT2G41500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0046
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT5G54840 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | SGP1 GTP BINDING |
AT3G06720 | PredictedAffinity Capture-WesternSynthetic Lethalityinteraction prediction | FSW = 0.0044
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT4G02060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0084
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G41630 | PredictedSynthetic Lethality | FSW = 0.0075
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G18450 | PredictedPhylogenetic profile method | FSW = 0.1716
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G15220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0439
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G53165 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G03090 | PredictedAffinity Capture-MS | FSW = 0.0525
| Unknown | MCCA METHYLCROTONOYL-COA CARBOXYLASE |
AT3G46520 | PredictedAffinity Capture-MSin vivoGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1799
| Unknown | ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G59370 | PredictedPhylogenetic profile method | FSW = 0.2380
| Unknown | ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G04750 | PredictedSynthetic Lethality | FSW = 0.0698
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G02580 | PredictedSynthetic Lethality | FSW = 0.0290
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT1G16190 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G56600 | PredictedSynthetic Rescue | FSW = 0.0425
| Unknown | PRF3 (PROFILIN 3) ACTIN BINDING |
AT5G20570 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT2G30910 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.2119
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G31300 | Predictedin vitroin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2702
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT5G58290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0483
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT3G42830 | PredictedSynthetic Lethality | FSW = 0.0255
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT5G38470 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT2G19770 | PredictedSynthetic Lethality | FSW = 0.0298
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
AT3G60830 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2234
| Unknown | ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G42090 | PredictedPhylogenetic profile method | FSW = 0.2314
| Unknown | ACT9 (ACTIN 9) ATP BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G42100 | PredictedPhylogenetic profile method | FSW = 0.2314
| Unknown | ACTIN PUTATIVE |
AT5G37590 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | BINDING |
AT1G30825 | Predictedtwo hybridSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0491
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT2G33385 | Predictedtwo hybrid | FSW = 0.0744
| Unknown | ARPC2B (ACTIN-RELATED PROTEIN C2B) STRUCTURAL MOLECULE |
AT1G60430 | PredictedSynthetic Lethalityin vivoCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0855
| Unknown | ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE |
AT4G34540 | Predictedin vivoAffinity Capture-MS | FSW = 0.0057
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT4G14147 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.0860
| Unknown | ARPC4 PROTEIN BINDING |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0622
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G25220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0425
| Unknown | ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) ANTHRANILATE SYNTHASE |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0539
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G49490 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternSynthetic LethalitySynthetic Lethalityinterologs mappingAffinity Capture-Western | FSW = 0.0573
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT1G69070 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0681
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G80930 | PredictedSynthetic Lethality | FSW = 0.0064
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G16440 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0106
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G32850 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0603
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G03960 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0364
| Unknown | CHAPERONIN PUTATIVE |
AT3G05870 | PredictedSynthetic Lethality | FSW = 0.0061
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G11270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0586
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G16840 | PredictedSynthetic Lethality | FSW = 0.0014
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18850 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G20250 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0210
| Unknown | APUM5 (ARABIDOPSIS PUMILIO 5) RNA BINDING / BINDING |
AT3G20650 | PredictedSynthetic Lethality | FSW = 0.0033
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G22142 | PredictedSynthetic Lethality | FSW = 0.0804
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0405
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G24090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0190
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G13970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0318
| Unknown | APG12B (AUTOPHAGY 12 B) |
AT4G33080 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G40440 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0490
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
AT4G08500 | PredictedSynthetic Lethality | FSW = 0.0305
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT4G39830 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0229
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT5G06160 | PredictedSynthetic Lethality | FSW = 0.0045
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G14240 | PredictedSynthetic Lethality | FSW = 0.0339
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK) |
AT5G43010 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0313
| Unknown | RPT4A ATPASE |
AT5G48120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0450
| Unknown | BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0281
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G66100 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0289
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G02690 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0048
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT1G12040 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.0795
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
AT5G10660 | PredictedAffinity Capture-Westernsynthetic growth defectSynthetic Rescueinteraction prediction | FSW = 0.1414
| Unknown | CALMODULIN-BINDING PROTEIN-RELATED |
AT1G32610 | PredictedSynthetic LethalityAffinity Capture-WesternReconstituted Complexsynthetic growth defectSynthetic LethalitySynthetic Rescue | FSW = 0.0781
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G09000 | PredictedSynthetic Lethality | FSW = 0.0425
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
AT4G35890 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT1G75020 | PredictedSynthetic Lethality | FSW = 0.0252
| Unknown | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE |
AT1G53570 | PredictedSynthetic Lethality | FSW = 0.0343
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G04080 | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | PRP39 BINDING |
AT5G35700 | Predictedinteraction prediction | FSW = 0.0661
| Unknown | FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING |
AT1G54960 | Predictedinteraction prediction | FSW = 0.0671
| Unknown | ANP2 MAP KINASE KINASE KINASE/ KINASE |
AT3G19020 | Predictedinteraction prediction | FSW = 0.0470
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454