Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56600 - ( PRF3 (PROFILIN 3) actin binding )
15 Proteins interacs with AT5G56600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G24150 | ExperimentalReconstituted Complex | FSW = 0.1778
| Class D:plastid (p = 0.78) | FH4 (FORMIN HOMOLOGUE 4) ACTIN BINDING / PROTEIN BINDING |
AT1G21980 | Experimentalpull downAffinity Capture-MS | FSW = 0.0889
| Unknown | ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ACTIN FILAMENT BINDING / ACTIN MONOMER BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT2G37620 | PredictedPhenotypic Suppression | FSW = 0.0632
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G45970 | PredictedPhenotypic Suppression | FSW = 0.0671
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT2G31200 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0431
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT5G03730 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G31300 | PredictedSynthetic Rescue | FSW = 0.0941
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT5G06150 | PredictedPhenotypic Suppression | FSW = 0.0159
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G56580 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0800
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT1G13180 | Predictedtwo hybrid | FSW = 0.1058
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G28820 | Predictedtwo hybrid | FSW = 0.0593
| Unknown | ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT5G47480 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | UNKNOWN PROTEIN |
AT3G27000 | PredictedSynthetic Rescue | FSW = 0.0425
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G15070 | PredictedSynthetic Rescue | FSW = 0.0226
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT1G71790 | PredictedSynthetic Lethality | FSW = 0.0291
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454