Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03730 - ( CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) kinase/ protein binding / protein serine/threonine kinase/ protein serine/threonine/tyrosine kinase )
83 Proteins interacs with AT5G03730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G66340 | ExperimentalReconstituted ComplexAffinity Capture-Westerntwo hybridtwo hybridpull downpull downco-fractionationCo-fractionationCo-purificationReconstituted ComplexAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.0364
| Unknown | ETR1 (ETHYLENE RESPONSE 1) ETHYLENE BINDING / PROTEIN HISTIDINE KINASE/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G59830 | ExperimentalReconstituted Complex | FSW = 0.0129
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G18960 | Experimental | FSW = 0.0056
| Class D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G40940 | Experimentalpull downtwo hybridAffinity Capture-Western | FSW = 0.0460
| Unknown | ERS1 (ETHYLENE RESPONSE SENSOR 1) ETHYLENE BINDING / PROTEIN HISTIDINE KINASE/ RECEPTOR |
AT2G47430 | Experimentalpull down | FSW = 0.0115
| Unknown | CKI1 (CYTOKININ-INDEPENDENT 1) PROTEIN HISTIDINE KINASE/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G23150 | Experimentalpull down | FSW = 0.0517
| Unknown | ETR2 (ETHYLENE RESPONSE 2) ETHYLENE BINDING / GLYCOGEN SYNTHASE KINASE 3/ PROTEIN HISTIDINE KINASE/ RECEPTOR |
AT1G43170 | Predictedtwo hybrid | FSW = 0.0070
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56000 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0281
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT4G13940 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT1G58030 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G05630 | PredictedbiochemicalAffinity Capture-WesternReconstituted Complex | FSW = 0.0449
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT3G18165 | Predictedin vitrotwo hybrid | FSW = 0.0129
| Unknown | MOS4 (MODIFIER OF SNC14) |
AT3G58500 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0381
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G10450 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSin vitroin vitroin vivoin vivoin vitroin vivoin vitroin vitroin vivoin vitroin vivoin vivoPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancementin vivotwo hybridin vitroAffinity Capture-MSAffinity Capture-Westernfar western blottingReconstituted Complex | FSW = 0.0425
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G13580 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT4G38740 | Predictedin vivo | FSW = 0.0197
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G48750 | Predictedin vivoin vivo | FSW = 0.0218
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G71860 | Predictedin vitroin vitroin vivoin vivoPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic Suppressionin vivoAffinity Capture-MSin vitro | FSW = 0.0850
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G55360 | Predictedtwo hybridtwo hybrid | FSW = 0.0080
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT3G45880 | Predictedtwo hybridtwo hybrid | FSW = 0.0465
| Unknown | INVOLVED IN PHOSPHOLIPID BIOSYNTHETIC PROCESS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN SHOOT APEX ROOT SEED EXPRESSED DURING E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR JUMONJI/ASPARTYL BETA-HYDROXYLASE (INTERPROIPR003347) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN (TAIRAT5G198401) HAS 836 BLAST HITS TO 833 PROTEINS IN 185 SPECIES ARCHAE - 0 BACTERIA - 185 METAZOA - 390 FUNGI - 96 PLANTS - 69 VIRUSES - 0 OTHER EUKARYOTES - 96 (SOURCE NCBI BLINK) |
AT5G42740 | Predictedtwo hybridtwo hybrid | FSW = 0.0103
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
AT5G45970 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.1122
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G19010 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0243
| Unknown | MPK16 MAP KINASE |
AT2G18040 | PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G19330 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0544
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0020
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0168
| Unknown | CHC1 |
AT2G36010 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G60440 | Predictedin vitro | FSW = 0.0375
| Unknown | AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G18130 | PredictedAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.0089
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT3G15220 | PredictedAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.0159
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G34390 | Predictedin vivo | FSW = 0.0598
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G06210 | Predictedin vitro | FSW = 0.0027
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G14300 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0624
| Unknown | ATPHB5 (PROHIBITIN 5) |
AT1G69220 | Predictedin vitroin vivoin vivoin vitro | FSW = 0.0458
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G05230 | Predictedtwo hybridtwo hybrid | FSW = 0.0414
| Unknown | SIGNAL PEPTIDASE SUBUNIT FAMILY PROTEIN |
AT5G27430 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | SIGNAL PEPTIDASE SUBUNIT FAMILY PROTEIN |
AT3G08730 | Predictedin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.0196
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G48760 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AD) |
AT5G56600 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | PRF3 (PROFILIN 3) ACTIN BINDING |
AT4G21160 | Predictedin vivoin vitro | FSW = 0.0259
| Unknown | ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING |
AT5G03840 | Predictedin vivoAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0331
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G56340 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT1G61580 | Predictedtwo hybridtwo hybrid | FSW = 0.0053
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G53360 | PredictedPhenotypic Suppression | FSW = 0.0296
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12280 | Predictedin vitroin vivoPhenotypic EnhancementAffinity Capture-MSin vivoin vitro | FSW = 0.0547
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G22400 | Predictedtwo hybridin vivo | FSW = 0.0979
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT5G09740 | Predictedtwo hybridPhenotypic Enhancementtwo hybrid | FSW = 0.0076
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G14670 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G67260 | Predictedtwo hybrid | FSW = 0.0535
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G23000 | PredictedPhenotypic Suppression | FSW = 0.0310
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT1G54360 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G35320 | PredictedPhenotypic Enhancement | FSW = 0.0304
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT3G01320 | Predictedtwo hybrid | FSW = 0.0172
| Unknown | SNL1 (SIN3-LIKE 1) |
AT3G61790 | PredictedPhenotypic Suppression | FSW = 0.0230
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT4G11330 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementin vivo | FSW = 0.0734
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT2G39550 | PredictedPhenotypic Enhancement | FSW = 0.0372
| Unknown | PGGT-I CAAX-PROTEIN GERANYLGERANYLTRANSFERASE/ PROTEIN HETERODIMERIZATION |
AT5G36940 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | CAT3 (CATIONIC AMINO ACID TRANSPORTER 3) BASIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT5G43130 | PredictedPhenotypic Suppression | FSW = 0.0098
| Unknown | TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR |
AT5G56580 | Predictedin vivoPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic Suppressionin vivoin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.1600
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT5G15020 | Predictedtwo hybrid | FSW = 0.0251
| Unknown | SNL2 (SIN3-LIKE 2) |
AT5G23535 | Predictedtwo hybridtwo hybrid | FSW = 0.0074
| Unknown | KOW DOMAIN-CONTAINING PROTEIN |
AT1G30460 | Predictedbiochemical | FSW = 0.0069
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT3G47610 | PredictedAffinity Capture-Western | FSW = 0.0083
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G54180 | Predictedin vitroin vivoin vivoin vitro | FSW = 0.0263
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT3G57550 | Predictedin vivoin vitroin vivo | FSW = 0.0162
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT4G35750 | Predictedin vitroAffinity Capture-MS | FSW = 0.0172
| Unknown | RHO-GTPASE-ACTIVATING PROTEIN-RELATED |
AT5G10220 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0291
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT5G18680 | Predictedin vivoin vitro | FSW = 0.0248
| Unknown | ATTLP11 (TUBBY LIKE PROTEIN 11) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
AT5G47080 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G57020 | Predictedin vivo | FSW = 0.0122
| Unknown | NMT1 (MYRISTOYL-COAPROTEIN N-MYRISTOYLTRANSFERASE) GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE/ MYRISTOYLTRANSFERASE |
AT5G58690 | Predictedin vivoin vivoin vivoin vivoin vivoin vitro | FSW = 0.0917
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G26360 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0042
| Unknown | CHAPERONIN PUTATIVE |
AT5G47790 | Predictedin vitro | FSW = 0.0125
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
AT5G49310 | Predictedin vivoin vitro | FSW = 0.0086
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT3G58040 | PredictedPhenotypic Suppression | FSW = 0.0143
| Unknown | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G47240 | Predictedtwo hybrid | FSW = 0.0056
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G49110 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | UNKNOWN PROTEIN |
AT5G56060 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT4G03460 | Predictedtwo hybridEnriched domain pair | FSW = 0.0125
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G24190 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
AT5G62700 | Predictedtwo hybrid | FSW = 0.0055
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454