Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G53360 - ( seven in absentia (SINA) family protein )
47 Proteins interacs with AT5G53360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G56010 | ExperimentalReconstituted Complexbiochemical | FSW = 0.0640
| Unknown | NAC1 TRANSCRIPTION FACTOR |
AT4G14960 | PredictedAffinity Capture-MStwo hybridin vivoin vitro | FSW = 0.0124
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G61790 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | CALNEXIN 1 (CNX1) |
AT5G56000 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0468
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT5G27850 | Predictedtwo hybrid | FSW = 0.0059
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G36340 | Predictedin vivo | FSW = 0.0221
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT5G10450 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G52150 | Predictedtwo hybrid | FSW = 0.0293
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G10540 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | PEPTIDASE M3 FAMILY PROTEIN / THIMET OLIGOPEPTIDASE FAMILY PROTEIN |
AT4G10760 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | MTA (MRNA ADENOSINE METHYLASE) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ METHYLTRANSFERASE |
AT5G02370 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G16630 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | KINESIN-13A ATP BINDING / MICROTUBULE MOTOR |
AT4G10450 | Predictedtwo hybrid | FSW = 0.0168
| Unknown | 60S RIBOSOMAL PROTEIN L9 (RPL90D) |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0126
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G15680 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0208
| Unknown | BINDING |
AT4G12770 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | HEAT SHOCK PROTEIN BINDING |
AT1G30070 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.1368
| Unknown | SGS DOMAIN-CONTAINING PROTEIN |
AT1G79950 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | HELICASE-RELATED |
AT3G56990 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT4G09800 | Predictedtwo hybrid | FSW = 0.0058
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G60980 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G64200 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G19210 | Predictedtwo hybrid | FSW = 0.0034
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G62500 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT1G02090 | Predictedtwo hybrid | FSW = 0.0168
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT5G03730 | PredictedPhenotypic Suppression | FSW = 0.0296
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G39740 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | UNKNOWN PROTEIN |
AT1G63660 | PredictedPhenotypic Enhancement | FSW = 0.0052
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G12550 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN |
AT3G52390 | Predictedtwo hybrid | FSW = 0.0027
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G11330 | PredictedPhenotypic Enhancement | FSW = 0.0264
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G28830 | Predictedtwo hybrid | FSW = 0.0640
| Unknown | METHYLTRANSFERASE/ NUCLEIC ACID BINDING |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G06150 | Predictedtwo hybrid | FSW = 0.0059
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G08550 | Predictedtwo hybrid | FSW = 0.0640
| Unknown | ILP1 (INCREASED LEVEL OF POLYPLOIDY1-1D) TRANSLATION REPRESSOR |
AT5G15020 | PredictedPhenotypic Enhancement | FSW = 0.0252
| Unknown | SNL2 (SIN3-LIKE 2) |
AT1G07840 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | LEUCINE ZIPPER FACTOR-RELATED |
AT4G06634 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G14147 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | ARPC4 PROTEIN BINDING |
AT5G23550 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G241701) HAS 455 BLAST HITS TO 455 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 195 FUNGI - 96 PLANTS - 62 VIRUSES - 0 OTHER EUKARYOTES - 102 (SOURCE NCBI BLINK) |
AT5G56150 | Predictedtwo hybridPhenotypic Suppressionin vitroAffinity Capture-MS | FSW = 0.0150
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT5G67490 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | UNKNOWN PROTEIN |
AT3G52115 | PredictedReconstituted ComplexAffinity Capture-Westerntwo hybrid | FSW = 0.0291
| Unknown | ATGR1 (ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1) |
AT3G57870 | PredictedAffinity Capture-MS | FSW = 0.0043
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G37475 | Predictedin vivo | FSW = 0.0320
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT5G42190 | Predictedin vivoAffinity Capture-MS | FSW = 0.0067
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G67320 | Predictedin vivo | FSW = 0.0166
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454