Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G06634 - ( zinc finger (C2H2 type) family protein )
31 Proteins interacs with AT4G06634Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20290 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G20060 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
AT2G44680 | Predictedinteraction predictiontwo hybrid | FSW = 0.0084
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G24330 | PredictedGene fusion method | FSW = 0.0784
| Unknown | ATXR6 DNA BINDING / PROTEIN BINDING |
AT1G17680 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0214
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0205
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G26360 | PredictedGene fusion method | FSW = 0.0515
| Unknown | BINDING |
AT1G72820 | PredictedGene fusion method | FSW = 0.0245
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G14800 | Predictedtwo hybrid | FSW = 0.0593
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT5G53360 | Predictedtwo hybrid | FSW = 0.0094
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT4G39370 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G60780 | Predictedtwo hybrid | FSW = 0.0115
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT3G49650 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT4G15475 | Predictedinterologs mappinginterologs mapping | FSW = 0.0131
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT5G01720 | Predictedinterologs mappinginterologs mapping | FSW = 0.0134
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0222
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G17670 | PredictedGene fusion method | FSW = 0.0901
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G54900 | PredictedGene fusion method | FSW = 0.2915
| Unknown | ATRBP45A (RNA-BINDING PROTEIN 45A) RNA BINDING |
AT2G26760 | PredictedGene fusion method | FSW = 0.0250
| Unknown | CYCB14 (CYCLIN B14) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G48030 | PredictedGene fusion method | FSW = 0.0245
| Unknown | HYPOXIA-RESPONSIVE FAMILY PROTEIN / ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G10350 | PredictedGene fusion method | FSW = 0.0198
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G41880 | PredictedGene fusion method | FSW = 0.0611
| Unknown | GK-1 (GUANYLATE KINASE 1) GUANYLATE KINASE |
AT5G56180 | PredictedGene fusion method | FSW = 0.0672
| Unknown | ATARP8 (ACTIN-RELATED PROTEIN 8) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G33260 | PredictedGene fusion method | FSW = 0.0250
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G01670 | PredictedGene fusion method | FSW = 0.0094
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT1G06550 | PredictedGene fusion method | FSW = 0.0332
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT5G50600 | PredictedGene fusion method | FSW = 0.0784
| Unknown | ATHSD1 (HYDROXYSTEROID DEHYDROGENASE 1) BINDING / CATALYTIC/ OXIDOREDUCTASE |
AT5G50700 | PredictedGene fusion method | FSW = 0.1176
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G69790 | PredictedGene fusion method | FSW = 0.0515
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G80670 | PredictedGene fusion method | FSW = 0.0965
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G26040 | PredictedGene fusion method | FSW = 0.0588
| Unknown | HDA2 HISTONE DEACETYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454