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AT2G44680 - ( CKB4 (CASEIN KINASE II BETA SUBUNIT 4) protein serine/threonine kinase )

119 Proteins interacs with AT2G44680

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G25520	Predicted two hybrid two hybrid two hybrid in vivo in vivo in vitro in vivo two hybrid	FSW = 0.0097	Class C: nucleus cytosol	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G19670	Predicted two hybrid two hybrid	FSW = 0.0172	Class C: nucleus cytosol	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT4G37930	Predicted in vitro	FSW = 0.0108	Class C: nucleus	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING
AT5G20290	Predicted two hybrid two hybrid	FSW = 0.0371	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT5G59690	Predicted biochemical	FSW = 0.1642	Class C: nucleus	HISTONE H4
AT1G74710	Predicted synthetic growth defect	FSW = 0.0211	Class C: nucleus	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G67630	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0485	Class C: nucleus	DNA HELICASE PUTATIVE
AT1G16610	Predicted Affinity Capture-MS	FSW = 0.0026	Class C: nucleus	SR45 RNA BINDING / PROTEIN BINDING
AT2G24490	Predicted Phenotypic Enhancement	FSW = 0.0480	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT1G17790	Predicted Affinity Capture-MS	FSW = 0.0959	Class C: nucleus	DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN
AT3G13445	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0421	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G35910	Predicted Phenotypic Enhancement	FSW = 0.1009	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT4G20440	Predicted two hybrid two hybrid	FSW = 0.0073	Class C: nucleus	SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
AT4G10710	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1558	Class C: nucleus	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT5G27720	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0276	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G10670	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1404	Class C: nucleus	GTC2
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.0458	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT4G38130	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0493	Class C: nucleus	HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G02740	Predicted Phenotypic Enhancement	FSW = 0.1610	Class C: nucleus	CHROMATIN BINDING
AT2G47620	Predicted Phenotypic Enhancement	FSW = 0.1146	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G54350	Predicted Affinity Capture-MS	FSW = 0.0042	Class C: nucleus	EMB1967 (EMBRYO DEFECTIVE 1967)
AT2G13370	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2264	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G15430	Predicted Phenotypic Enhancement	FSW = 0.0655	Class C: nucleus	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G24500	Predicted Phenotypic Enhancement	FSW = 0.0615	Class C: nucleus	FZF TRANSCRIPTION FACTOR
AT1G65470	Predicted Phenotypic Enhancement	FSW = 0.1017	Class C: nucleus	FAS1 (FASCIATA 1) HISTONE BINDING
AT4G08350	Predicted Affinity Capture-MS	FSW = 0.0774	Class C: nucleus	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT4G25340	Predicted biochemical	FSW = 0.0402	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G06230	Predicted Affinity Capture-MS	FSW = 0.0832	Class C: nucleus	GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING
AT1G55520	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0538	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G34210	Predicted Affinity Capture-MS	FSW = 0.0612	Class C: nucleus	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0428	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.1344	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870	Predicted Phenotypic Enhancement	FSW = 0.1025	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G15550	Predicted two hybrid two hybrid	FSW = 0.0244	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G06210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement interaction prediction	FSW = 0.1194	Class C: nucleus	ELF8 (EARLY FLOWERING 8) BINDING
AT5G52640	Predicted synthetic growth defect	FSW = 0.0342	Class C: cytosol	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G07660	Predicted biochemical	FSW = 0.1049	Unknown	HISTONE H4
AT2G34480	Predicted two hybrid two hybrid	FSW = 0.0083	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G64790	Predicted Phenotypic Enhancement	FSW = 0.0796	Unknown	BINDING
AT5G25780	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0364	Unknown	EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G16630	Predicted Phenotypic Suppression	FSW = 0.0426	Unknown	RAD4 DAMAGED DNA BINDING
AT5G63110	Predicted Affinity Capture-MS	FSW = 0.0824	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G21065	Predicted two hybrid	FSW = 0.0219	Unknown	UNKNOWN PROTEIN
AT2G45300	Predicted Phenotypic Enhancement	FSW = 0.0172	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT4G32520	Predicted in vitro	FSW = 0.0186	Unknown	SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT1G12520	Predicted synthetic growth defect	FSW = 0.0725	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G49830	Predicted Affinity Capture-MS	FSW = 0.0351	Unknown	DNA HELICASE-RELATED
AT3G12110	Predicted Phenotypic Enhancement	FSW = 0.0574	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G20090	Predicted Co-crystal Structure Co-crystal Structure two hybrid two hybrid Affinity Capture-MS	FSW = 0.0660	Unknown	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT3G43810	Predicted Affinity Capture-Western	FSW = 0.0136	Unknown	CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410	Predicted Affinity Capture-Western	FSW = 0.0077	Unknown	CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT3G11400	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0343	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT4G11420	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0314	Unknown	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT1G75510	Predicted Phenotypic Enhancement	FSW = 0.0758	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT1G59900	Predicted Phenotypic Enhancement	FSW = 0.0716	Unknown	AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT5G66020	Predicted Phenotypic Enhancement	FSW = 0.0591	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G23890	Predicted in vitro interologs mapping interaction prediction	FSW = 0.0616	Unknown	TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT5G57450	Predicted Phenotypic Enhancement	FSW = 0.0672	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G28730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1455	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.1298	Unknown	SOH1 FAMILY PROTEIN
AT1G50920	Predicted interaction prediction	FSW = 0.0213	Unknown	GTP-BINDING PROTEIN-RELATED
AT5G54260	Predicted Phenotypic Enhancement	FSW = 0.0859	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G23070	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid interologs mapping Enriched domain pair Co-expression	FSW = 0.2803	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G05910	Predicted Affinity Capture-MS interaction prediction	FSW = 0.1644	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780	Predicted Phenotypic Suppression	FSW = 0.0747	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29150	Predicted Phenotypic Suppression	FSW = 0.0293	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G29990	Predicted Phenotypic Suppression	FSW = 0.0827	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G52740	Predicted Phenotypic Enhancement	FSW = 0.2414	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890	Predicted Phenotypic Enhancement	FSW = 0.1409	Unknown	SNL5 (SIN3-LIKE 5)
AT1G60970	Predicted two hybrid Affinity Capture-Western	FSW = 0.0286	Unknown	CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT1G66740	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1369	Unknown	SGA2
AT1G74250	Predicted Phenotypic Enhancement	FSW = 0.0027	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G79730	Predicted Phenotypic Enhancement Affinity Capture-MS	FSW = 0.1021	Unknown	ELF7 (EARLY FLOWERING 7)
AT1G04160	Predicted Synthetic Lethality	FSW = 0.0400	Unknown	XIB (MYOSIN XI B) MOTOR
AT1G10090	Predicted Synthetic Lethality	FSW = 0.0191	Unknown	UNKNOWN PROTEIN
AT1G25155	Predicted synthetic growth defect	FSW = 0.0276	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G30825	Predicted interologs mapping	FSW = 0.0441	Unknown	DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE
AT1G35350	Predicted synthetic growth defect	FSW = 0.0400	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G60620	Predicted Phenotypic Enhancement	FSW = 0.0420	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G61040	Predicted Affinity Capture-MS	FSW = 0.1787	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G67190	Predicted Synthetic Lethality	FSW = 0.0854	Unknown	F-BOX FAMILY PROTEIN
AT1G78770	Predicted synthetic growth defect	FSW = 0.0195	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT3G18030	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0437	Unknown	ATHAL3A FMN BINDING / PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE
AT3G18660	Predicted synthetic growth defect	FSW = 0.0364	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290	Predicted synthetic growth defect	FSW = 0.0376	Unknown	UNKNOWN PROTEIN
AT3G22590	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1865	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G06634	Predicted interaction prediction two hybrid	FSW = 0.0084	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT4G12620	Predicted two hybrid two hybrid Reconstituted Complex	FSW = 0.1046	Unknown	ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G16970	Predicted Synthetic Lethality	FSW = 0.0087	Unknown	ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G27130	Predicted synthetic growth defect	FSW = 0.0403	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G09740	Predicted synthetic growth defect	FSW = 0.1379	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G14050	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0241	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14520	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0386	Unknown	PESCADILLO-RELATED
AT5G16170	Predicted synthetic growth defect	FSW = 0.0493	Unknown	UNKNOWN PROTEIN
AT5G26680	Predicted synthetic growth defect	FSW = 0.0970	Unknown	ENDONUCLEASE PUTATIVE
AT5G45620	Predicted synthetic growth defect	FSW = 0.0287	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G46030	Predicted Reconstituted Complex	FSW = 0.0823	Unknown	UNKNOWN PROTEIN
AT3G10070	Predicted Phenotypic Enhancement	FSW = 0.0647	Unknown	TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G46320	Predicted biochemical	FSW = 0.0761	Unknown	HISTONE H4
AT3G56150	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0291	Unknown	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G04210	Predicted Phenotypic Enhancement	FSW = 0.1450	Unknown	PUX4 PROTEIN BINDING
AT4G30870	Predicted Phenotypic Enhancement	FSW = 0.0793	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G10260	Predicted Phenotypic Enhancement	FSW = 0.1435	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G13780	Predicted Phenotypic Suppression	FSW = 0.0858	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G21170	Predicted Phenotypic Enhancement	FSW = 0.0224	Unknown	5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G23290	Predicted Phenotypic Suppression	FSW = 0.0742	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G41880	Predicted Phenotypic Suppression	FSW = 0.0818	Unknown	POLA3 DNA PRIMASE
AT5G45600	Predicted Phenotypic Enhancement	FSW = 0.1556	Unknown	GAS41 PROTEIN BINDING
AT5G57160	Predicted Phenotypic Enhancement	FSW = 0.0293	Unknown	ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT2G23080	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interologs mapping Enriched domain pair Co-expression	FSW = 0.1553	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G22860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0570	Unknown	TIF3C2 TRANSLATION INITIATION FACTOR
AT1G48605	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0457	Unknown	ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE
AT3G12340	Predicted biochemical	FSW = 0.0364	Unknown	FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G67380	Predicted interologs mapping interaction prediction Enriched domain pair Co-expression	FSW = 0.0608	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G47240	Predicted two hybrid	FSW = 0.0040	Unknown	ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT1G34370	Predicted two hybrid	FSW = 0.0152	Unknown	STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G62700	Predicted two hybrid	FSW = 0.0039	Unknown	TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT3G60250	Predicted Phylogenetic profile method Co-expression	FSW = 0.0366	Unknown	CKB3 PROTEIN KINASE REGULATOR/ TRANSCRIPTION FACTOR BINDING
AT4G17640	Predicted Gene fusion method Co-expression	FSW = 0.0154	Unknown	CKB2 PROTEIN KINASE CK2 REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G44680 - ( CKB4 (CASEIN KINASE II BETA SUBUNIT 4) protein serine/threonine kinase )

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