Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G63810 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nrap protein (InterProIPR005554) Has 268 Blast hits to 263 proteins in 124 species Archae - 3 Bacteria - 0 Metazoa - 116 Fungi - 89 Plants - 17 Viruses - 0 Other Eukaryotes - 43 (source NCBI BLink) )
89 Proteins interacs with AT1G63810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.2362
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT3G60770 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1261
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT5G20290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2571
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3658
| Class C:nucleus | RNA BINDING |
AT4G00100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3540
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G04390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1076
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT2G44680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0428
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0188
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G56990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4412
| Class C:nucleus | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT4G19610 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0622
| Class C:nucleus | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G05060 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3666
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.2256
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.4530
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT3G60500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0722
| Class C:nucleus | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT3G57000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4988
| Class C:nucleus | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.2590
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT4G25630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3297
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0337
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT1G75230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0102
| Class C:nucleus | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3925
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1085
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT3G18130 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0922
| Class C:nucleus | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT4G05410 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4843
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G66540 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4935
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT2G37990 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0941
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT2G17360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2124
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G37270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1248
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.1885
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1000
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT5G10350 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G18080 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0468
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G06530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4535
| Unknown | BINDING |
AT2G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0067
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0613
| Unknown | BINDING |
AT2G47990 | PredictedAffinity Capture-MS | FSW = 0.3729
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G10490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4887
| Unknown | UNKNOWN PROTEIN |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.1457
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G30800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1712
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.2932
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT3G22660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0871
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G06720 | PredictedAffinity Capture-MS | FSW = 0.4604
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2965
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G31660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4181
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G42440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2341
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G20370 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0231
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G69070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4424
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.3490
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT2G17250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5309
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT2G28360 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G44150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0034
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G01160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1743
| Unknown | UNKNOWN PROTEIN |
AT3G10530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4400
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G18030 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | ATHAL3A FMN BINDING / PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT3G56510 | PredictedAffinity Capture-MS | FSW = 0.3106
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
AT4G07410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4538
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G28200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5128
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT4G30870 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4738
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.4703
| Unknown | RNA BINDING |
AT5G13780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0142
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G14050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2341
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G22110 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G51120 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT2G17510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0108
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0963
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0542
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.4146
| Unknown | BINDING |
AT2G40430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0978
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT2G47420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2852
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT3G09720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1711
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G13230 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3030
| Unknown | RNA BINDING |
AT3G15460 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1123
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G18740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0956
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT4G04940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4020
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G15750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4352
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.2394
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G61330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1935
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.2298
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G23080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0576
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G48605 | PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT1G19480 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G12990 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0612
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT1G33390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2041
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G36240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0341
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G27470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2635
| Unknown | TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED |
AT1G52930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0493
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0575
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G39770 | Predictedinteraction prediction | FSW = 0.0227
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454