Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G63810 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nrap protein (InterProIPR005554) Has 268 Blast hits to 263 proteins in 124 species Archae - 3 Bacteria - 0 Metazoa - 116 Fungi - 89 Plants - 17 Viruses - 0 Other Eukaryotes - 43 (source NCBI BLink) )

89 Proteins interacs with AT1G63810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.2362

Class C:

nucleus

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT3G60770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1261

Class C:

nucleus

40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT5G20290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2571

Class C:

nucleus

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3658

Class C:

nucleus

RNA BINDING
AT4G00100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3540

Class C:

nucleus

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G04390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1076

Class C:

nucleus

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT2G44680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0428

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0188

Class C:

nucleus

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT3G56990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4412

Class C:

nucleus

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT4G19610Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0622

Class C:

nucleus

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G05060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3666

Class C:

nucleus

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.2256

Class C:

nucleus

RNA HELICASE PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.4530

Class C:

nucleus

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G60500

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0722

Class C:

nucleus

CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING
AT3G57000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4988

Class C:

nucleus

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.2590

Class C:

nucleus

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G25630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3297

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0337

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT1G75230

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0102

Class C:

nucleus

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3925

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1085

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT3G18130

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0922

Class C:

nucleus

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT4G05410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4843

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66540

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4935

Class C:

nucleus

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT2G37990

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0941

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT2G17360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2124

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G37270

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1248

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.1885

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1000

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G10350

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT1G18080

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0468

Unknown

ATARCA NUCLEOTIDE BINDING
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4535

Unknown

BINDING
AT2G18040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0067

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G30990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0613

Unknown

BINDING
AT2G47990

Predicted

Affinity Capture-MS

FSW = 0.3729

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4887

Unknown

UNKNOWN PROTEIN
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.1457

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1712

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.2932

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT3G22660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0871

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G06720

Predicted

Affinity Capture-MS

FSW = 0.4604

Unknown

INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2965

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4181

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2341

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G20370

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0231

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G69070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4424

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.3490

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G17250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5309

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G28360

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT2G44150

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0034

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G01160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1743

Unknown

UNKNOWN PROTEIN
AT3G10530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4400

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G18030

Predicted

Affinity Capture-MS

FSW = 0.0568

Unknown

ATHAL3A FMN BINDING / PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE
AT3G56510

Predicted

Affinity Capture-MS

FSW = 0.3106

Unknown

TBP-BINDING PROTEIN PUTATIVE
AT4G07410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4538

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G28200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5128

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G30870

Predicted

Affinity Capture-MS

FSW = 0.0235

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G30991Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4738

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G08420

Predicted

Affinity Capture-MS

FSW = 0.4703

Unknown

RNA BINDING
AT5G13780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0142

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G14050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2341

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G22110

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING
AT5G51120

Predicted

Affinity Capture-MS

FSW = 0.0363

Unknown

PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING
AT2G17510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0108

Unknown

EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G18220

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0963

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G23070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0542

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.4146

Unknown

BINDING
AT2G40430

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0978

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT2G47420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2852

Unknown

DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G09720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1711

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G13230

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3030

Unknown

RNA BINDING
AT3G15460

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1123

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G18740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0956

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT4G04940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4020

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4352

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.2394

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G61330

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1935

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.2298

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G23080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0576

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G48605

Predicted

Affinity Capture-MS

FSW = 0.0777

Unknown

ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE
AT1G07990

Predicted

Affinity Capture-MS

FSW = 0.0309

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G19480

Predicted

Affinity Capture-MS

FSW = 0.0176

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G12990

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0612

Unknown

RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING
AT1G33390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2041

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN
AT1G36240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0341

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G27470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2635

Unknown

TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G52930

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0493

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT5G67380

Predicted

interaction prediction

FSW = 0.0575

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G39770

Predicted

interaction prediction

FSW = 0.0227

Unknown

DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454