Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58420 - ( 40S ribosomal protein S4 (RPS4D) )
63 Proteins interacs with AT5G58420| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G04920
   | PredictedAffinity Capture-MS | FSW = 0.5067
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MS | FSW = 0.3237
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.5848
| Class C:nucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.4546
| Class C:nucleus | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.3441
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.5171
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.4640
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.4203
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.3618
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.5056
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.4764
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.4655
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.5713
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT2G37190
| PredictedAffinity Capture-MS | FSW = 0.4255
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.5696
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.5215
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT3G57150
| PredictedAffinity Capture-MS | FSW = 0.2065
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.5123
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.4215
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.2911
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT5G54910
| PredictedAffinity Capture-MS | FSW = 0.1499
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G63810
| PredictedAffinity Capture-MS | FSW = 0.2590
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT3G05060
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1994
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.2781
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT4G05410
| PredictedAffinity Capture-MS | FSW = 0.2169
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G36160
| PredictedAffinity Capture-MS | FSW = 0.1376
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
| AT2G17360
| PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4277
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.4182
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.4975
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.4544
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.5049
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT5G07090
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0093
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.4588
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.4687
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.2764
| Unknown | BINDING |
| AT2G33340
| PredictedCo-purification | FSW = 0.0489
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.3686
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.5056
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.3804
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.4046
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT5G22100
| PredictedAffinity Capture-MS | FSW = 0.2017
| Unknown | RNA CYCLASE FAMILY PROTEIN |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.4275
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.3613
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.5515
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.4542
| Unknown | UNKNOWN PROTEIN |
| AT1G77670
| Predictedtwo hybrid | FSW = 0.0185
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
| AT3G05000
| Predictedtwo hybrid | FSW = 0.0149
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
| AT4G36630
| Predictedtwo hybrid | FSW = 0.0697
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
| AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.3231
| Unknown | BINDING |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.4303
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.3701
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G46840
| PredictedAffinity Capture-MS | FSW = 0.1627
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.2177
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G31660
| PredictedAffinity Capture-MS | FSW = 0.3040
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G69070
| PredictedAffinity Capture-MS | FSW = 0.2975
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT1G71350
| PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
| AT2G17250
| PredictedAffinity Capture-MS | FSW = 0.2432
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.4444
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT4G19210
| PredictedAffinity Capture-MS | FSW = 0.2510
| Unknown | ATRLI2 TRANSPORTER |
| AT4G21110
| PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | G10 FAMILY PROTEIN |
| AT5G08420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3386
| Unknown | RNA BINDING |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.3386
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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