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AT2G09990 - ( 40S ribosomal protein S16 (RPS16A) )

76 Proteins interacs with AT2G09990

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.4638	Class C: plastid plasma membrane	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.5532	Class C: plastid plasma membrane	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2997	Class C: plastid plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.6104	Class C: plastid plasma membrane	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2847	Class C: plastid plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1990	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3454	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.5110	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.4129	Class C: plastid	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3724	Class C: plastid	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.4829	Class C: plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04230	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.0750	Class C: plastid	40S RIBOSOMAL PROTEIN S16 (RPS16B)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3927	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT2G33340	Predicted Co-purification	FSW = 0.0804	Class C: plastid	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.6090	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.5889	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3880	Class C: plasma membrane	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4637	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4705	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1447	Class C: plasma membrane	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5701	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2280	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.4952	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5298	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4851	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.5701	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G53890	Predicted Affinity Capture-MS	FSW = 0.0063	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT5G52640	Predicted Synthetic Lethality	FSW = 0.0168	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.5606	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.4746	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.1011	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.6350	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.5056	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3730	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4812	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.5094	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT2G21580	Predicted Affinity Capture-MS	FSW = 0.1507	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25B)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.4961	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2143	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4267	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.1695	Unknown	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G06700	Predicted Affinity Capture-MS	FSW = 0.4473	Unknown	60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.5293	Unknown	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.3941	Unknown	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.2394	Unknown	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.4226	Unknown	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.4588	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G05210	Predicted two hybrid	FSW = 0.1014	Unknown	NUCLEOLAR MATRIX PROTEIN-RELATED
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.1025	Unknown	RNA HELICASE PUTATIVE
AT1G04510	Predicted Co-purification	FSW = 0.0229	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G22380	Predicted Affinity Capture-MS	FSW = 0.0569	Unknown	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G17560	Predicted Affinity Capture-MS	FSW = 0.0203	Unknown	HLL (HUELLENLOS) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G20970	Predicted Affinity Capture-MS	FSW = 0.0029	Unknown	NFU4 STRUCTURAL MOLECULE
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.4943	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT5G18380	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.0608	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.3473	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT3G56340	Predicted Affinity Capture-MS	FSW = 0.0717	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT5G02960	Predicted Affinity Capture-MS	FSW = 0.2489	Unknown	40S RIBOSOMAL PROTEIN S23 (RPS23B)
AT5G52650	Predicted Affinity Capture-MS	FSW = 0.1243	Unknown	40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4508	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.5112	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G18660	Predicted two hybrid two hybrid	FSW = 0.0686	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G48780	Predicted two hybrid two hybrid	FSW = 0.0113	Unknown	SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.0863	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT4G36020	Predicted Affinity Capture-MS	FSW = 0.0158	Unknown	CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.4369	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.2574	Unknown	ATRLI2 TRANSPORTER
AT4G38630	Predicted Affinity Capture-MS	FSW = 0.0397	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0582	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.4815	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.5595	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.4221	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.5145	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G23570	Predicted Affinity Capture-MS	FSW = 0.0137	Unknown	SGS3 (SUPPRESSOR OF GENE SILENCING 3)
AT3G13640	Predicted Affinity Capture-MS	FSW = 0.1076	Unknown	ATRLI1 TRANSPORTER
AT2G25700	Predicted two hybrid	FSW = 0.0214	Unknown	ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G09990 - ( 40S ribosomal protein S16 (RPS16A) )

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